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通过差异基因表达模式分析发现 COVID-19 和囊性纤维化之间的共同病理生理过程。

Discovering Common Pathophysiological Processes between COVID-19 and Cystic Fibrosis by Differential Gene Expression Pattern Analysis.

机构信息

Department of Software Engineering, Daffodil International University (DIU), Ashulia, Savar, Dhaka 1341, Bangladesh.

Department of Computer Science, Cihan University Sulaimaniya, Sulaimaniya, 46001 Kurdistan Region, Iraq.

出版信息

Biomed Res Int. 2022 Apr 29;2022:8078259. doi: 10.1155/2022/8078259. eCollection 2022.

Abstract

Coronaviruses are a family of viruses that infect mammals and birds. Coronaviruses cause infections of the respiratory system in humans, which can be minor or fatal. A comparative transcriptomic analysis has been performed to establish essential profiles of the gene expression of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) linked to cystic fibrosis (CF). Transcriptomic studies have been carried out in relation to SARS-CoV-2 since a number of people have been diagnosed with CF. The recognition of differentially expressed genes demonstrated 8 concordant genes shared between the SARS-CoV-2 and CF. Extensive gene ontology analysis and the discovery of pathway enrichment demonstrated SARS-CoV-2 response to CF. The gene ontological terms and pathway enrichment mechanisms derived from this research may affect the production of successful drugs, especially for the people with the following disorder. Identification of TF-miRNA association network reveals the interconnection between TF genes and miRNAs, which may be effective to reveal the other influenced disease that occurs for SARS-CoV-2 to CF. The enrichment of pathways reveals SARS-CoV-2-associated CF mostly engaged with the type of innate immune system, Toll-like receptor signaling pathway, pantothenate and CoA biosynthesis, allograft rejection, graft-versus-host disease, intestinal immune network for IgA production, mineral absorption, autoimmune thyroid disease, legionellosis, viral myocarditis, inflammatory bowel disease (IBD), etc. The drug compound identification demonstrates that the drug targets of IMIQUIMOD and raloxifene are the most significant with the significant hub DEGs.

摘要

冠状病毒是一类能够感染哺乳动物和鸟类的病毒。冠状病毒会引起人类呼吸系统感染,症状可轻可重,甚至致命。为了建立与囊性纤维化(CF)相关的严重急性呼吸综合征冠状病毒 2(SARS-CoV-2)的基因表达基本特征,我们进行了比较转录组分析。由于已经诊断出一些 CF 患者感染了 SARS-CoV-2,因此针对 SARS-CoV-2 开展了转录组研究。差异表达基因的识别显示,SARS-CoV-2 和 CF 之间有 8 个共同表达的基因。广泛的基因本体论分析和途径富集发现表明,SARS-CoV-2 对 CF 有反应。本研究得出的基因本体术语和途径富集机制可能会影响成功药物的研发,特别是对患有以下疾病的人。TF-miRNA 关联网络的鉴定揭示了 TF 基因和 miRNA 之间的相互联系,这可能有助于揭示 SARS-CoV-2 向 CF 转变过程中其他受影响的疾病。途径的富集表明,SARS-CoV-2 相关的 CF 主要与先天免疫系统类型、Toll 样受体信号通路、泛酸和 CoA 生物合成、同种异体移植排斥、移植物抗宿主病、IgA 产生的肠道免疫网络、矿物质吸收、自身免疫性甲状腺疾病、军团病、病毒性心肌炎、炎症性肠病(IBD)等有关。药物化合物鉴定表明,IMIQUIMOD 和雷洛昔芬的药物靶点是最重要的,与重要的枢纽 DEGs 有关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f591/9076317/40dc1dfd8c41/BMRI2022-8078259.001.jpg

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