• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

逐步增加构象空间中的复杂性:权衡伦敦色散与阳离子-π 相互作用。

Increasing Complexity in a Conformer Space Step-by-Step: Weighing London Dispersion against Cation-π Interactions.

机构信息

Laboratorium für Organische Chemie, ETH Zurich, Vladimir-Prelog-Weg 2, CH-8093 Zurich, Switzerland.

出版信息

J Am Chem Soc. 2022 May 25;144(20):9007-9022. doi: 10.1021/jacs.2c01381. Epub 2022 May 12.

DOI:10.1021/jacs.2c01381
PMID:35549249
Abstract

We report an evaluation of the importance of London dispersion in moderately large (up to 36 heavy atoms) organic molecules by means of a molecular torsion balance whose conformations "weigh" one interaction against another in the absence of solvents. The experimental study, with gas-phase cryogenic ion vibrational predissociation (CIVP) spectroscopy, solid-state Fourier transfer infrared (FT-IR), and single-crystal X-ray crystallography, is accompanied by density functional theory calculations, including an extensive search and analysis of accessible conformations. We begin with the unsubstituted molecular torsion balance, and then step up the complexity systematically by adding alkyl groups incrementally as dispersion energy donors (DEDs) to achieve a degree of chemical complexity comparable to what is typically found in transition states for many regio- and stereoselective reactions in organic and organometallic chemistry. We find clear evidence for the small attractive contribution by DEDs, as had been reported in other studies, but we also find that small individual contributions by London dispersion, when they operate in opposition to other weak noncovalent interactions, produce composite effects on the structure that are difficult to predict intuitively, or by modern quantum chemical calculations. The experimentally observed structures, together with a reasonable value for a reference cation-π interaction, indicate that the pairwise interaction between two -butyl groups, in the best case, is modest. Moreover, the visualization of the conformational space, and comparison to spectroscopic indicators of the structure, as one steps up the complexity of the manifold of noncovalent interactions, makes clear that in silico predictive ability for the structure of moderately large, flexible, organic molecules falters sooner than one might have expected.

摘要

我们通过分子扭秤评估了伦敦色散在较大(多达 36 个重原子)有机分子中的重要性,该扭秤的构象在没有溶剂的情况下“权衡”一种相互作用与另一种相互作用。实验研究结合气相低温离子振动预解离(CIVP)光谱、固态傅里叶变换红外(FT-IR)和单晶 X 射线晶体学,同时进行密度泛函理论计算,包括广泛搜索和分析可及构象。我们从未取代的分子扭秤开始,然后通过逐步增加烷基作为色散能供体(DED)来系统地增加复杂性,以达到与有机和有机金属化学中许多区域和立体选择性反应的过渡态相当的化学复杂性程度。我们发现了 DED 具有小的吸引力贡献的明确证据,这在其他研究中已有报道,但我们也发现,当伦敦色散的小个体贡献与其他弱非共价相互作用相反时,它们会对结构产生难以直观预测或通过现代量子化学计算预测的复合效应。实验观察到的结构,以及合理的参考阳离子-π 相互作用值,表明两个 -丁基基团之间的成对相互作用在最佳情况下是适度的。此外,随着非共价相互作用的复杂性不断增加,对构象空间的可视化以及与结构的光谱指标的比较,清楚地表明,对于较大、灵活的有机分子结构的计算预测能力比人们预期的更早失效。

相似文献

1
Increasing Complexity in a Conformer Space Step-by-Step: Weighing London Dispersion against Cation-π Interactions.逐步增加构象空间中的复杂性:权衡伦敦色散与阳离子-π 相互作用。
J Am Chem Soc. 2022 May 25;144(20):9007-9022. doi: 10.1021/jacs.2c01381. Epub 2022 May 12.
2
Cryogenic ion vibrational predissociation (CIVP) spectroscopy of a gas-phase molecular torsion balance to probe London dispersion forces in large molecules.利用气相分子扭秤的低温离子振动预解离(CIVP)光谱法研究大分子中的伦敦色散力。
J Chem Phys. 2019 Dec 21;151(23):234304. doi: 10.1063/1.5124227.
3
An NMR Spectroscopy View on London Dispersion in Catalysis: Detection, Quantification, and Application in Ion Pair and Transition Metal Catalysis.核磁共振光谱法对催化中伦敦色散的研究:离子对和过渡金属催化中的检测、定量及应用
Acc Chem Res. 2023 Nov 7;56(21):2968-2979. doi: 10.1021/acs.accounts.3c00431. Epub 2023 Oct 27.
4
Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).大分子拥挤现象:化学与物理邂逅生物学(瑞士阿斯科纳,2012年6月10日至14日)
Phys Biol. 2013 Aug;10(4):040301. doi: 10.1088/1478-3975/10/4/040301. Epub 2013 Aug 2.
5
Understanding and Quantifying London Dispersion Effects in Organometallic Complexes.理解和量化有机金属配合物中的伦敦色散效应。
Acc Chem Res. 2019 Jan 15;52(1):258-266. doi: 10.1021/acs.accounts.8b00505. Epub 2018 Dec 26.
6
Antimycobacterial, antimicrobial activity, experimental (FT-IR, FT-Raman, NMR, UV-Vis, DSC) and DFT (transition state, chemical reactivity, NBO, NLO) studies on pyrrole-isonicotinyl hydrazine.吡咯异烟酰腙的抗分枝杆菌、抗菌活性、实验(FT-IR、FT-Raman、NMR、UV-Vis、DSC)和 DFT(过渡态、化学反应性、NBO、NLO)研究。
Spectrochim Acta A Mol Biomol Spectrosc. 2017 May 15;179:1-10. doi: 10.1016/j.saa.2017.02.021. Epub 2017 Feb 11.
7
Quantum chemical calculations and interpretation of electronic transitions and spectroscopic characteristics belonging to 1-(3-Mesityl-3-methylcyclobutyl)-2-(naphthalene-1-yloxy)ethanone.1-(3-均三甲苯基-3-甲基环丁基)-2-(萘-1-基氧基)乙酮的量子化学计算及电子跃迁和光谱特征解析
Spectrochim Acta A Mol Biomol Spectrosc. 2015 Feb 25;137:899-912. doi: 10.1016/j.saa.2014.08.119. Epub 2014 Sep 17.
8
Vibrational spectra, structural conformations, scaled quantum chemical calculations and NBO analysis of 3-acetyl-7-methoxycoumarin.3-乙酰-7-甲氧基香豆素的振动光谱、结构构象、量子化学计算和自然键轨道分析。
Spectrochim Acta A Mol Biomol Spectrosc. 2012 Dec;99:234-47. doi: 10.1016/j.saa.2012.07.084. Epub 2012 Aug 23.
9
Synthesis, crystal structure, vibrational spectroscopy, optical properties and theoretical studies of a new organic-inorganic hybrid material: [((CH3)2NH2)(+)]6·[(BiBr6)(3-)]2.一种新型有机-无机杂化材料[((CH3)2NH2)(+)]6·[(BiBr6)(3-)]2的合成、晶体结构、振动光谱、光学性质及理论研究
Spectrochim Acta A Mol Biomol Spectrosc. 2014 Dec 10;133:357-64. doi: 10.1016/j.saa.2014.05.073. Epub 2014 Jun 10.
10
Quantum mechanical study and spectroscopic (FT-IR, FT-Raman, UV-Visible) study, potential energy surface scan, Fukui function analysis and HOMO-LUMO analysis of 3-tert-butyl-4-methoxyphenol by DFT methods.采用密度泛函理论(DFT)方法对3-叔丁基-4-甲氧基苯酚进行量子力学研究与光谱学(傅里叶变换红外光谱、傅里叶变换拉曼光谱、紫外-可见光谱)研究、势能面扫描、福井函数分析和最高占据分子轨道-最低未占据分子轨道分析。
Spectrochim Acta A Mol Biomol Spectrosc. 2014 Sep 15;130:604-20. doi: 10.1016/j.saa.2014.04.058. Epub 2014 Apr 20.

引用本文的文献

1
Heterobimetallic Complexes That Point to When Bond Dissociation Energies Deviate from Computational Expectations.揭示键解离能与计算预期不符情况的异双金属配合物。
J Am Chem Soc. 2025 Apr 30;147(17):14105-14121. doi: 10.1021/jacs.4c14399. Epub 2025 Apr 15.
2
Scaffold-Oriented Asymmetric Catalysis: Conformational Modulation of Transition State Multivalency during a Catalyst-Controlled Assembly of a Pharmaceutically Relevant Atropisomer.基于支架的不对称催化:手性药物相关轴手性分子的催化剂控制组装过程中过渡态多价态的构象调节。
Chemistry. 2024 May 28;30(30):e202401109. doi: 10.1002/chem.202401109. Epub 2024 Apr 11.
3
Prebiotic access to enantioenriched amino acids via peptide-mediated transamination reactions.
通过肽介导的转氨反应对富含对映体的氨基酸进行益生元获取。
Proc Natl Acad Sci U S A. 2024 Feb 13;121(7):e2315447121. doi: 10.1073/pnas.2315447121. Epub 2024 Feb 5.
4
Cryogenic Ion Vibrational Predissociation (CIVP) Spectroscopy of Aryl Cobinamides in the Gas Phase: How Good Are the Calculations for Vitamin B Derivatives?气相中芳基钴胺素的低温离子振动预解离(CIVP)光谱:维生素B衍生物的计算结果有多准确?
J Am Chem Soc. 2023 Sep 13;145(36):19561-19570. doi: 10.1021/jacs.3c03001. Epub 2023 Sep 1.
5
Atomistic simulations of the Escherichia coli ribosome provide selection criteria for translationally active substrates.大肠杆菌核糖体的原子模拟为翻译活性底物提供了选择标准。
Nat Chem. 2023 Jul;15(7):913-921. doi: 10.1038/s41557-023-01226-w. Epub 2023 Jun 12.