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核酸检测:G-四链体控制的L-半胱氨酸氧化及催化发夹组装辅助信号放大

Detection of nucleic acids G-quadruplex-controlled l-cysteine oxidation and catalyzed hairpin assembly-assisted signal amplification.

作者信息

Chen Piaopiao, Hu Pingyue, Huang Ke, Sawyer Erica, Sun Ke, Ying Binwu, Wei Xiawei, Geng Jia

机构信息

Department of Laboratory Medicine, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University and Collaborative Innovation Center for Biotherapy Chengdu Sichuan 610041 China

College of Chemistry and Material Science, Sichuan Normal University Chengdu Sichuan 610068 China.

出版信息

RSC Adv. 2018 Dec 5;8(71):40564-40569. doi: 10.1039/c8ra08296k. eCollection 2018 Dec 4.


DOI:10.1039/c8ra08296k
PMID:35557911
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9091423/
Abstract

The development of simple, sensitive and cost-effective methods for specific nucleic acid detection has attracted tremendous attention due to its importance to the early diagnosis of genetic diseases and to biodefense applications. In this work, we demonstrated a fluorescent turn-off mode DNA assay based on l-cysteine-modulated synthesis of CdTe quantum dots (CdTe QDs), horseradish peroxidase-mimicking G-quadruplex-hemin-K complex controlled oxidation of l-cysteine to cystine, and catalyzed hairpin assembly (CHA)-assisted signal amplification. After the addition of target DNA, the CHA signal amplification reaction was triggered and numerous H1-H2 double-stranded DNA were formed, initiating the release of G-quadruplex sequences in H2 simultaneously. Thus, the degree of inhibition of the synthesis of CdTe QDs is proportional to the concentration of the G-quadruplex sequence in this method. In contrast, when the target DNA was absent, the CHA could not be triggered, and the fluorescence signal was high due to the remaining intact l-cysteine. Under optimal experimental conditions, the homogeneous fluorescence method achieved the detection of HIV DNA with a linear range from 0.1 pM to 1 nM and a detection limit of 0.12 pM. This novel biosensor exhibits excellent specificity in differentiating DNA sequences with a single-base and two-base mismatch. To the best of our knowledge, this a label-free and highly sensitive bioassay utilizing CHA-assisted signal amplification and G-quadruplex control of synthesis of CdTe QDs strategy was not reported in previous. Thus, this proposed strategy is anticipated to find use in basic biochemical research and clinical diagnosis.

摘要

开发简单、灵敏且经济高效的特定核酸检测方法因其对遗传疾病早期诊断和生物防御应用的重要性而备受关注。在这项工作中,我们展示了一种基于 l-半胱氨酸调节 CdTe 量子点(CdTe QDs)合成、辣根过氧化物酶模拟物 G-四链体-血红素-K 复合物控制 l-半胱氨酸氧化为胱氨酸以及催化发夹组装(CHA)辅助信号放大的荧光猝灭模式 DNA 检测方法。加入目标 DNA 后,触发 CHA 信号放大反应,形成大量 H1-H2 双链 DNA,同时引发 H2 中 G-四链体序列的释放。因此,该方法中 CdTe QDs 合成的抑制程度与 G-四链体序列的浓度成正比。相反,当不存在目标 DNA 时,无法触发 CHA,由于剩余完整的 l-半胱氨酸,荧光信号较高。在最佳实验条件下,该均相荧光方法实现了对 HIV DNA 的检测,线性范围为 0.1 pM 至 1 nM,检测限为 0.12 pM。这种新型生物传感器在区分单碱基和双碱基错配的 DNA 序列方面表现出优异的特异性。据我们所知,此前尚未报道过这种利用 CHA 辅助信号放大和 G-四链体控制 CdTe QDs 合成策略的无标记且高灵敏度生物测定法。因此,预计该策略将在基础生化研究和临床诊断中得到应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6dce/9091423/07a85f1cac33/c8ra08296k-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6dce/9091423/061be09c57b2/c8ra08296k-s1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6dce/9091423/1073302bf299/c8ra08296k-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6dce/9091423/bd02008e70e1/c8ra08296k-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6dce/9091423/07a85f1cac33/c8ra08296k-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6dce/9091423/061be09c57b2/c8ra08296k-s1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6dce/9091423/1073302bf299/c8ra08296k-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6dce/9091423/bd02008e70e1/c8ra08296k-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6dce/9091423/07a85f1cac33/c8ra08296k-f3.jpg

相似文献

[1]
Detection of nucleic acids G-quadruplex-controlled l-cysteine oxidation and catalyzed hairpin assembly-assisted signal amplification.

RSC Adv. 2018-12-5

[2]
Circular exponential amplification of photoinduced electron transfer using hairpin probes, G-quadruplex DNAzyme and silver nanocluster-labeled DNA for ultrasensitive fluorometric determination of pathogenic bacteria.

Mikrochim Acta. 2018-2-10

[3]
CdTe/CdSe quantum dot-based fluorescent aptasensor with hemin/G-quadruplex DNzyme for sensitive detection of lysozyme using rolling circle amplification and strand hybridization.

Biosens Bioelectron. 2016-8-3

[4]
A cascade amplification strategy of catalytic hairpin assembly and hybridization chain reaction for the sensitive fluorescent assay of the model protein carcinoembryonic antigen.

Mikrochim Acta. 2018-1-10

[5]
Label-Free and Ultrasensitive Biomolecule Detection Based on Aggregation Induced Emission Fluorogen via Target-Triggered Hemin/G-Quadruplex-Catalyzed Oxidation Reaction.

ACS Appl Mater Interfaces. 2018-1-25

[6]
A label-free fluorescent biosensor based on a catalyzed hairpin assembly for HIV DNA and lead detection.

Anal Methods. 2021-6-7

[7]
An enzyme-free electrochemical biosensor for simultaneous detection of two hemophilia A biomarkers: Combining target recycling with quantum dots-encapsulated metal-organic frameworks for signal amplification.

Anal Chim Acta. 2019-9-16

[8]
Target-triggered DNA nanoassembly on quantum dots and DNAzyme-modulated double quenching for ultrasensitive microRNA biosensing.

Biosens Bioelectron. 2016-11-5

[9]
Exonuclease III-assisted strand displacement reaction-driven cyclic generation of G-quadruplex strategy for homogeneous fluorescent detection of melamine.

Talanta. 2019-5-18

[10]
Lighting Up Fluorescent Silver Clusters via Target-Catalyzed Hairpin Assembly for Amplified Biosensing.

Langmuir. 2018-8-8

本文引用的文献

[1]
Highly Ordered and Field-Free 3D DNA Nanostructure: The Next Generation of DNA Nanomachine for Rapid Single-Step Sensing.

J Am Chem Soc. 2018-7-19

[2]
Detection of Nucleic Acids in Complex Samples via Magnetic Microbead-Assisted Catalyzed Hairpin Assembly and "DD-A" FRET.

Anal Chem. 2018-5-31

[3]
Preparation of Microkernel-Based Mesoporous (SiO-CdTe-SiO)@SiO Fluorescent Nanoparticles for Imaging Screening and Enrichment of Heat Shock Protein 90 Inhibitors from Tripterygium Wilfordii.

Anal Chem. 2018-4-18

[4]
Analyte-Triggered DNA-Probe Release from a Triplex Molecular Beacon for Nanopore Sensing.

Angew Chem Int Ed Engl. 2018-2-28

[5]
Label-Free and Ultrasensitive Biomolecule Detection Based on Aggregation Induced Emission Fluorogen via Target-Triggered Hemin/G-Quadruplex-Catalyzed Oxidation Reaction.

ACS Appl Mater Interfaces. 2018-1-25

[6]
Dithiothreitol-Regulated Coverage of Oligonucleotide-Modified Gold Nanoparticles To Achieve Optimized Biosensor Performance.

ACS Appl Mater Interfaces. 2018-1-18

[7]
Exonuclease III-boosted cascade reactions for ultrasensitive SERS detection of nucleic acids.

Biosens Bioelectron. 2017-12-29

[8]
Label-Free DNA Assay by Metal Stable Isotope Detection.

Anal Chem. 2017-12-5

[9]
A versatile covalent organic framework-based platform for sensing biomolecules.

Chem Commun (Camb). 2017-10-17

[10]
Single copy-sensitive electrochemical assay for circulating methylated DNA in clinical samples with ultrahigh specificity based on a sequential discrimination-amplification strategy.

Chem Sci. 2017-7-1

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