Raptis Vasilios, Karatasos Kostas
Chemical Engineering Department, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece.
Theoretical and Physical Chemistry Institute, National Hellenic Research Foundation, 11635 Athens, Greece.
Polymers (Basel). 2022 Apr 26;14(9):1762. doi: 10.3390/polym14091762.
Our work concerns the study of four candidate drug compounds of the terpenoid family, found as essential oil ingredients in species of the Greek endemic flora, namely carvacrol, p-cymene, γ-terpinene, and thymol, via the simulation method of molecular dynamics. Aquatic solutions of each compound, as well as a solution of all four together in realistic (experimental) proportions, are simulated at atmospheric pressure and 37 °C using an OPLS force field combined with TIP3P water. As verified, all four compounds exhibit a strong tendency to phase-separate, thereby calling for the use of carrier molecules as aids for the drug to circulate in the blood and enter the cells. Systems of two such carrier molecules, the hyperbranched poly(ethylene imine) (HBPEI) polyelectrolyte and hyperbranched polyglycerol (HPG), are examined in mixtures with carvacrol, the most abundant among the four compounds, at a range of concentrations, as well as with all four compounds present in natural proportions. Although a tendency of the terpenoids to cluster separately persists at high concentrations, promising association effects are observed for all drug-polymer ratios. HBPEI systems tend to form diffuse structures comprising small mixed clusters as well as freely floating polymer and essential oil molecules, a finding attributed to the polymer-polymer electrostatic repulsions, which here are only partially screened by the counterions. On the other hand, the electrically neutral HPG molecules cluster together with essential oil species to form a single nanodroplet. Currently, terpenoid-polymer clusters near lipid bilayer membranes are being studied to determine the propensity of the formed complexes to enter cell membranes.
我们的工作涉及通过分子动力学模拟方法,对萜类家族的四种候选药物化合物进行研究。这些化合物是在希腊本土植物物种的精油成分中发现的,即香芹酚、对伞花烃、γ-萜品烯和百里香酚。使用结合了TIP3P水模型的OPLS力场,在大气压和37°C条件下,模拟了每种化合物的水溶液,以及按实际(实验)比例混合的所有四种化合物的溶液。经证实,所有四种化合物都表现出强烈的相分离倾向,因此需要使用载体分子来辅助药物在血液中循环并进入细胞。研究了两种这样的载体分子,即超支化聚(乙烯亚胺)(HBPEI)聚电解质和超支化聚甘油(HPG),与四种化合物中含量最高的香芹酚在一系列浓度下的混合物,以及与按天然比例存在的所有四种化合物的混合物。尽管在高浓度下萜类化合物仍有单独聚集的倾向,但在所有药物 - 聚合物比例下都观察到了有前景的缔合效应。HBPEI体系倾向于形成包含小的混合簇以及自由漂浮的聚合物和精油分子的弥散结构,这一发现归因于聚合物 - 聚合物静电排斥作用,在这里反离子仅部分屏蔽了这种排斥作用。另一方面,电中性的HPG分子与精油物种聚集在一起形成单个纳米液滴。目前正在研究脂质双分子层膜附近的萜类 - 聚合物簇,以确定形成的复合物进入细胞膜的倾向。