1. Department of Rheumatology and Clinical Immunology, the 980th Hospital of the Joint Logistic Support Force of the People's Liberation Army, Shijiazhuang 050082, China.
2. First Clinical Medical College, Nanjing University of Chinese Medicine, Nanjing 210023, China.
Zhejiang Da Xue Xue Bao Yi Xue Ban. 2022 Feb 25;51(1):62-72. doi: 10.3724/zdxbyxb-2021-0230.
To explore the mechanism of ovarian toxicity of Hook. F. (TwHF) by network pharmacology and molecular docking. The candidate toxic compounds and targets of TwHF were collected by the Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP) and the Comparative Toxicogenomics Database (CTD). Then, the potential ovarian toxic targets were obtained from CTD, and the target genes of ovarian toxicity of TwHF were analyzed using the STRING database. The protein-protein interaction (PPI) network was established by Cytoscape and analyzed by the cytoHubba plug-in to identify hub genes. Additionally, the target genes of ovarian toxicity of TwHF were subjected to Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses by using the R software. Finally, Discovery Studio software was used for molecular docking verification of the core toxic compounds and the hub genes. Nine candidate toxic compounds of TwHF and 56 potential ovarian toxic targets were identified in this study. Further network analysis showed that the core ovarian toxic compounds of TwHF were triptolide, kaempferol and tripterine, and the hub ovarian toxic genes included , , , , , , , , and . Besides, the GO and KEGG analysis indicated that TwHF caused ovarian toxicity through oxidative stress, reproductive system development and function, regulation of cell cycle, response to endogenous hormones and exogenous stimuli, apoptosis regulation and aging. The docking studies suggested that 3 core ovarian toxic compounds of TwHF were able to fit in the binding pocket of the 10 hub genes. TwHF may cause ovarian toxicity by acting on 10 hub genes and 140 signaling pathways.
采用网络药理学和分子对接方法探讨钩藤(TwHF)卵巢毒性的作用机制。方法:通过中药系统药理学数据库和分析平台(TCMSP)和比较毒理学基因组数据库(CTD)收集钩藤候选毒性化合物和靶点。然后,从 CTD 获得潜在的卵巢毒性靶点,并使用 STRING 数据库分析钩藤卵巢毒性的靶基因。通过 Cytoscape 构建蛋白质-蛋白质相互作用(PPI)网络,并使用 cytoHubba 插件进行分析,以确定关键基因。此外,使用 R 软件对钩藤卵巢毒性的靶基因进行基因本体(GO)和京都基因与基因组百科全书(KEGG)富集分析。最后,使用 Discovery Studio 软件对核心毒性化合物和关键基因进行分子对接验证。结果:共鉴定出钩藤 9 种候选毒性化合物和 56 个潜在卵巢毒性靶点。进一步的网络分析表明,钩藤的核心卵巢毒性化合物为雷公藤甲素、山奈酚和苦参碱,核心卵巢毒性基因包括、、、、、、、和。此外,GO 和 KEGG 分析表明,钩藤通过氧化应激、生殖系统发育和功能、细胞周期调节、对内源性激素和外源性刺激的反应、细胞凋亡调节和衰老等途径引起卵巢毒性。分子对接研究表明,钩藤的 3 种核心卵巢毒性化合物能够与 10 个关键基因的结合口袋结合。结论:钩藤可能通过作用于 10 个关键基因和 140 个信号通路引起卵巢毒性。