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通过分子对接分析以及与相关研究比较,对苦木科植物淀粉水解酶的有效天然抑制剂进行研究。

Investigation of effective natural inhibitors for starch hydrolysing enzymes from Simaroubaceae plants by molecular docking analysis and comparison with studies.

作者信息

Mugaranja Kirana P, Kulal Ananda

机构信息

Biological Sciences Division, Poornaprajna Institute of Scientific Research, Bidalur Post, Devanahalli, Bangalore Rural, 562110, India.

Manipal Academy of Higher Education, Manipal, 576104, India.

出版信息

Heliyon. 2022 May 2;8(5):e09360. doi: 10.1016/j.heliyon.2022.e09360. eCollection 2022 May.

Abstract

The present study aims to find the effective natural enzyme inhibitors against alpha-amylase and alpha-glucosidase from the array of compounds identified in plants of the Simaroubaceae family using molecular docking and ADME/Toxicity studies. Among the 218 compounds docked against seven enzymes, buddlenol-A and citrusin-B showed the best binding energies (kcal/mol) of -7.830 and -7.383 against human salivary alpha-amylase and pancreatic alpha-amylase respectively. The other two compounds 9-hydroxycanthin-6-one and bruceolline-B had the best binding energy of -6.461 and -7.576 against N-terminal and C-terminal maltase glucoamylase respectively. Whereas the binding energy of prosopine (-6.499) and fisetinidol (-7.575) was considered as the best against N-terminal and C-terminal sucrase-isomaltase respectively. Picrasidine-X showed the best binding energy (-7.592) against yeast alpha-glucosidase. The study revealed that the seven compounds which showed the best binding energy against respective enzymes are considered as the 'lead hit compounds'. Even though the 'lead hit compounds' are not obeying all the laws of ADMET, the drug-likeness properties of 9-hydroxycanthin-6-one, fisetinidol, picrasidine-X, and prosopine were considerable. Also, kaempferol-3-O-pentoside was the recent compound identified from the plant extract found to be one among the top five lead hit compounds against four enzymes. This study provides valuable insight into the direction of developing natural compounds as potential starch hydrolysing enzyme inhibitors for managing type 2 diabetes.

摘要

本研究旨在通过分子对接和ADME/毒性研究,从苦木科植物中鉴定出的一系列化合物中寻找有效的抗α-淀粉酶和α-葡萄糖苷酶的天然酶抑制剂。在针对七种酶对接的218种化合物中,醉鱼草醇-A和柑橘苷-B分别对人唾液α-淀粉酶和胰腺α-淀粉酶显示出最佳结合能(千卡/摩尔),分别为-7.830和-7.383。另外两种化合物9-羟基铁屎米-6-酮和鸦胆子碱-B分别对N端和C端麦芽糖酶-葡糖淀粉酶显示出最佳结合能-6.461和-7.576。而原苏木素(-6.499)和漆树黄酮(-7.575)分别被认为是对N端和C端蔗糖酶-异麦芽糖酶的最佳结合能。苦味素-X对酵母α-葡萄糖苷酶显示出最佳结合能(-7.592)。该研究表明,对各自酶显示出最佳结合能的七种化合物被视为“先导命中化合物”。尽管“先导命中化合物”并不完全符合ADMET的所有规律,但9-羟基铁屎米-6-酮、漆树黄酮、苦味素-X和原苏木素的类药性质相当可观。此外,山奈酚-3-O-戊糖苷是最近从植物提取物中鉴定出的化合物,被发现是针对四种酶的前五种先导命中化合物之一。这项研究为开发天然化合物作为潜在的淀粉水解酶抑制剂来治疗2型糖尿病提供了有价值的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37f2/9118686/e78f57ff1f63/gr1.jpg

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