Department of Human Genetics, Radboud University Medical Center, Nijmegen, the Netherlands.
Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, the Netherlands.
Invest Ophthalmol Vis Sci. 2022 May 2;63(5):27. doi: 10.1167/iovs.63.5.27.
Inherited retinal diseases are a group of clinically and genetically heterogeneous disorders with approximately 270 genes involved. IMPG2 is associated with adult-onset vitelliform macular dystrophy. Here, we investigated two unrelated patients with vitelliform macular dystrophy to identify the underlying genetic cause.
Whole-exome sequencing identified a putative causal complex allele consisting of c.3023-15T>A and c.3023G>A (p.(Gly1008Asp)) in IMPG2 in both individuals. To assess its effect, in vitro splice assays in HEK293T and further characterization in patient-derived photoreceptor precursor cells (PPCs) were conducted.
The results of the midigene splice assays in HEK293T showed that the complex allele causes a variety of splicing defects ranging from a small deletion to (multiple-)exon skipping. This finding was further validated using patient-derived PPCs that showed a significant increase of out-of-frame transcripts lacking one or multiple exons compared to control-derived PPCs. Overall, control PPCs consistently showed low levels of aberrantly spliced IMPG2 transcripts that were highly elevated in patient-derived PPCs. These differences were even more obvious upon inhibition of nonsense-mediated decay with cycloheximide.
We report a heterozygous complex allele in IMPG2 causative for adult-onset vitelliform macular dystrophy in two unrelated individuals with mild visual loss and bilateral vitelliform lesions. The predicted causal missense mutation c.3023G>A, located in the consensus splice acceptor site, enhances the splicing effect of the upstream variant c.3023-15T>A, leading to the generation of aberrant transcripts that decrease the full-length IMPG2 levels. These results suggest a haploinsufficiency mechanism of action and highlight the complementarity of using different models to functionally assesses splicing defects.
遗传性视网膜疾病是一组临床上和遗传上具有异质性的疾病,涉及大约 270 个基因。IMPG2 与成年型卵黄样黄斑营养不良有关。在这里,我们研究了两名患有卵黄样黄斑营养不良的无关患者,以确定潜在的遗传原因。
全外显子组测序在两名个体的 IMPG2 中发现了一个假定的复杂等位基因,由 c.3023-15T>A 和 c.3023G>A(p.(Gly1008Asp))组成。为了评估其效应,在 HEK293T 中进行了中间基因剪接测定,并在患者来源的光感受器前体细胞(PPCs)中进行了进一步的特征分析。
HEK293T 中的中间基因剪接测定结果表明,该复杂等位基因导致多种剪接缺陷,从小缺失到(多个)外显子跳跃。这一发现使用来自患者的 PPCs 进一步得到验证,与来自对照的 PPCs 相比,这些 PPCs 显示出无义或多个外显子的框架外转录物显著增加。总体而言,与对照 PPCs 相比,来自患者的 PPCs 中异常剪接的 IMPG2 转录本水平始终较低,但在使用环己酰亚胺抑制无义介导的衰变后,这些水平显著升高。
我们报告了两个无关个体中 IMPG2 中的杂合复杂等位基因导致成年型卵黄样黄斑营养不良,这两个个体有轻度视力丧失和双侧卵黄样病变。预测的致病错义突变 c.3023G>A,位于共识剪接受体位点,增强了上游变异 c.3023-15T>A 的剪接效应,导致异常转录本的产生,降低全长 IMPG2 水平。这些结果表明了杂合不足的作用机制,并强调了使用不同模型来功能评估剪接缺陷的互补性。