Department of Thyroid Surgery, Xiangya Hospital, Central South University, Changsha, 410008, Hunan, China.
Department of Pathology, Xiangya Hospital, Central South University, Changsha, 410008, Hunan, China.
Sci Rep. 2022 May 25;12(1):8886. doi: 10.1038/s41598-022-13046-y.
Pyroptosis is an inflammatory form of cell death triggered by certain inflammasomes. However, research concerning pyroptosis-related lncRNAs in hepatocellular carcinoma (HCC) remains scarce. This study aims to explore the prognostic pyroptosis-related long non-coding RNAs (lncRNAs) of HCC patients. Data of 373 HCC patients were obtained from the TCGA database. The entire cohort was randomly divided into a training cohort and a validation cohort in a 2:1 ratio. Pyroptosis-related lncRNAs were identified by the Pearson correlation analysis with reported pyroptosis-related genes. LASSO Cox regression was used to construct the signature. A prognostic signature consisting of nine pyroptosis-related lncRNAs was identified, and patients with lower risk scores had a better prognosis than those with higher risk scores. Multivariate Cox regression analysis showed that the signature was an independent risk factor for prognosis in both the training and validation cohorts. In the training cohort, the area under the signature curve reached 0.8043 at 1-year, 0.7878 at 2-year, and 0.8118 at 3-year; in the validation cohort, it reached 0.7315 at 1-year, 0.7372 at 2-year, and 0.7222 at 3-year. Gene set enrichment analysis (GSEA) suggested associations between the signature and several immune-related pathways. The expression of multiple immune checkpoints was also increased in the high-risk group, including PD-1, PD-L1, CTLA4, B7-H3, VSIR, LAG3, and TIGIT. A novel pyroptosis-related lncRNA signature, which may be associated with tumor immunity and potentially serve as an indicator for immunotherapy, has been identified to precisely predict the prognosis of HCC patients.
细胞焦亡是一种由特定炎性小体触发的炎症形式的细胞死亡。然而,关于肝细胞癌 (HCC) 中与细胞焦亡相关的长链非编码 RNA (lncRNA) 的研究仍然很少。本研究旨在探讨 HCC 患者预后相关的细胞焦亡相关长链非编码 RNA (lncRNA)。从 TCGA 数据库中获得了 373 名 HCC 患者的数据。整个队列按 2:1 的比例随机分为训练队列和验证队列。通过与报道的细胞焦亡相关基因的 Pearson 相关性分析鉴定细胞焦亡相关 lncRNA。LASSO Cox 回归用于构建特征。确定了由 9 个细胞焦亡相关 lncRNA 组成的预后特征,风险评分较低的患者比风险评分较高的患者预后更好。多变量 Cox 回归分析显示,该特征在训练和验证队列中均为预后的独立危险因素。在训练队列中,特征曲线下面积在 1 年时达到 0.8043,在 2 年时达到 0.7878,在 3 年时达到 0.8118;在验证队列中,它在 1 年时达到 0.7315,在 2 年时达到 0.7372,在 3 年时达到 0.7222。基因集富集分析 (GSEA) 表明特征与几种免疫相关途径有关。高风险组中还增加了多种免疫检查点的表达,包括 PD-1、PD-L1、CTLA4、B7-H3、VSIR、LAG3 和 TIGIT。本研究确定了一个新的细胞焦亡相关 lncRNA 特征,该特征可能与肿瘤免疫有关,并可能作为免疫治疗的指标,可准确预测 HCC 患者的预后。