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产色链霉菌产物模板结构域代表了 I 型聚酮合酶脱水酶和醛缩酶之间的进化中间体。

The Streptomyces viridochromogenes product template domain represents an evolutionary intermediate between dehydratase and aldol cyclase of type I polyketide synthases.

机构信息

State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.

Joint International Research Laboratory of Metabolic & Developmental Sciences, Shanghai Jiao Tong University, Shanghai, China.

出版信息

Commun Biol. 2022 May 26;5(1):508. doi: 10.1038/s42003-022-03477-8.

DOI:10.1038/s42003-022-03477-8
PMID:35618872
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9135731/
Abstract

The product template (PT) domains act as an aldol cyclase to control the regiospecific aldol cyclization of the extremely reactive poly-β-ketone intermediate assembled by an iterative type I polyketide synthases (PKSs). Up to now, only the structure of fungal PksA PT that mediates the first-ring cyclization via C4-C9 aldol cyclization is available. We describe here the structural and computational characterization of a bacteria PT domain that controls C2-C7 cyclization in orsellinic acid (OSA) synthesis. Mutating the catalytic H949 of the PT abolishes production of OSA and results in a tetraacetic acid lactone (TTL) generated by spontaneous O-C cyclization of the acyl carrier protein (ACP)-bound tetraketide intermediate. Crystal structure of the bacterial PT domain closely resembles dehydrase (DH) domains of modular type I PKSs in the overall fold, dimerization interface and His-Asp catalytic dyad organization, but is significantly different from PTs of fungal iterative type I PKSs. QM/MM calculation suggests that the catalytic H949 abstracts a proton from C2 and transfers it to C7 carbonyl to mediate the cyclization reaction. According to structural similarity to DHs and functional similarity to fungal PTs, we propose that the bacterial PT represents an evolutionary intermediate between the two tailoring domains of type I PKSs.

摘要

产物模板 (PT) 结构域作为醛醇缩合酶,控制由迭代型 I 聚酮合酶 (PKS) 组装的极活泼聚-β-酮中间产物的区域特异性醛醇环化。到目前为止,只有介导通过 C4-C9 醛醇环化的第一环环化的真菌 PksA PT 的结构是可用的。我们在这里描述了控制orsellinic 酸 (OSA) 合成中 C2-C7 环化的细菌 PT 结构域的结构和计算特征。突变 PT 的催化 H949 会破坏 OSA 的产生,并导致酰基载体蛋白 (ACP) 结合的四酮中间产物通过自发的 O-C 环化生成四乙酸内酯 (TTL)。细菌 PT 结构域的晶体结构在整体折叠、二聚化界面和 His-Asp 催化二联体组织方面与模块化 I 型 PKS 的脱水酶 (DH) 结构域非常相似,但与真菌迭代型 I PKS 的 PT 明显不同。QM/MM 计算表明,催化 H949 从 C2 上夺取一个质子,并将其转移到 C7 羰基上,以介导环化反应。根据与 DHs 的结构相似性和与真菌 PTs 的功能相似性,我们提出细菌 PT 代表 I 型 PKS 两个修饰结构域之间的进化中间体。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04c6/9135731/5efcf6451d2d/42003_2022_3477_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04c6/9135731/7aae9d3b5a0a/42003_2022_3477_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04c6/9135731/865c01fc77cc/42003_2022_3477_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04c6/9135731/93284104c0bf/42003_2022_3477_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04c6/9135731/f2291ab55b80/42003_2022_3477_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04c6/9135731/3d123753e7c2/42003_2022_3477_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04c6/9135731/5efcf6451d2d/42003_2022_3477_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04c6/9135731/7aae9d3b5a0a/42003_2022_3477_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04c6/9135731/865c01fc77cc/42003_2022_3477_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04c6/9135731/93284104c0bf/42003_2022_3477_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04c6/9135731/f2291ab55b80/42003_2022_3477_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04c6/9135731/3d123753e7c2/42003_2022_3477_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04c6/9135731/5efcf6451d2d/42003_2022_3477_Fig6_HTML.jpg

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