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IG/TR 标志物鉴定和微小残留病分析的质量控制。

Quality Control for IG /TR Marker Identification and MRD Analysis.

机构信息

CLIP - Childhood Leukaemia Investigation Prague, Department of Paediatric Haematology and Oncology, Second Faculty of Medicine, Charles University and University Hospital Motol, Prague, Czech Republic.

出版信息

Methods Mol Biol. 2022;2453:91-99. doi: 10.1007/978-1-0716-2115-8_6.

DOI:10.1007/978-1-0716-2115-8_6
PMID:35622322
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9761552/
Abstract

Selection of the proper target is crucial for clinically relevant monitoring of minimal residual disease (MRD) in patients with acute lymphoblastic leukemia using the quantitation of clonal-specific immunoreceptor (immunoglobulin/T cell receptor) gene rearrangements. Consequently, correct interpretation of the results of the entire analysis is of utmost importance. Here we present an overview of the quality control measures that need to be implemented into the process of marker identification, selection, and subsequent quantitation of the MRD level.

摘要

选择合适的靶标对于使用克隆特异性免疫受体(免疫球蛋白/T 细胞受体)基因重排定量来监测急性淋巴细胞白血病患者的微小残留病(MRD)至关重要。因此,正确解释整个分析结果至关重要。在这里,我们介绍了在标记物鉴定、选择和随后的 MRD 水平定量过程中需要实施的质量控制措施概述。

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引用本文的文献

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Leukemia. 2024 Jun;38(6):1315-1322. doi: 10.1038/s41375-024-02272-0. Epub 2024 May 14.

本文引用的文献

1
Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study.采用标准化的下一代免疫球蛋白和 T 细胞受体基因重排测序技术鉴定急性淋巴细胞白血病微小残留病(MRD)标志物:一项 EuroClonality-NGS 验证研究。
Leukemia. 2019 Sep;33(9):2241-2253. doi: 10.1038/s41375-019-0496-7. Epub 2019 Jun 26.
2
Quality control and quantification in IG/TR next-generation sequencing marker identification: protocols and bioinformatic functionalities by EuroClonality-NGS.IG/TR 下一代测序标志物鉴定中的质量控制和定量:EuroClonality-NGS 的方案和生物信息学功能
Leukemia. 2019 Sep;33(9):2254-2265. doi: 10.1038/s41375-019-0499-4. Epub 2019 Jun 21.
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Next-generation sequencing indicates false-positive MRD results and better predicts prognosis after SCT in patients with childhood ALL.下一代测序显示儿童急性淋巴细胞白血病患者异基因造血干细胞移植后微小残留病结果存在假阳性,并能更好地预测预后。
Bone Marrow Transplant. 2017 Jul;52(7):962-968. doi: 10.1038/bmt.2017.16. Epub 2017 Feb 27.
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ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data.ARResT/Interrogate:用于 IG/TR NGS 数据的交互式免疫分析工具。
Bioinformatics. 2017 Feb 1;33(3):435-437. doi: 10.1093/bioinformatics/btw634.
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Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing.高通量测序中 V(D)J 重组的快速多克隆聚类。
BMC Genomics. 2014 May 28;15(1):409. doi: 10.1186/1471-2164-15-409.
6
B-cell reconstitution after allogeneic SCT impairs minimal residual disease monitoring in children with ALL.异基因造血干细胞移植后B细胞重建会损害急性淋巴细胞白血病患儿微小残留病的监测。
Bone Marrow Transplant. 2008 Aug;42(3):187-96. doi: 10.1038/bmt.2008.122. Epub 2008 May 19.
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Non-specific amplification of patient-specific Ig/TCR gene rearrangements depends on the time point during therapy: implications for minimal residual disease monitoring.患者特异性Ig/TCR基因重排的非特异性扩增取决于治疗期间的时间点:对微小残留病监测的影响
Leukemia. 2008 Mar;22(3):641-4. doi: 10.1038/sj.leu.2404925. Epub 2007 Sep 13.
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