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癌症中的大规模染色质重排

Large-Scale Chromatin Rearrangements in Cancer.

作者信息

Yamaguchi Kosuke, Chen Xiaoying, Oji Asami, Hiratani Ichiro, Defossez Pierre-Antoine

机构信息

UMR7216 Epigenetics and Cell Fate, Université Paris Cité, CNRS, F-75006 Paris, France.

RIKEN Center for Biosystems Dynamics Research (RIKEN BDR), Kobe 650-0047, Japan.

出版信息

Cancers (Basel). 2022 May 12;14(10):2384. doi: 10.3390/cancers14102384.

DOI:10.3390/cancers14102384
PMID:35625988
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9139990/
Abstract

Epigenetic abnormalities are extremely widespread in cancer. Some of them are mere consequences of transformation, but some actively contribute to cancer initiation and progression; they provide powerful new biological markers, as well as new targets for therapies. In this review, we examine the recent literature and focus on one particular aspect of epigenome deregulation: large-scale chromatin changes, causing global changes of DNA methylation or histone modifications. After a brief overview of the one-dimension (1D) and three-dimension (3D) epigenome in healthy cells and of its homeostasis mechanisms, we use selected examples to describe how many different events (mutations, changes in metabolism, and infections) can cause profound changes to the epigenome and fuel cancer. We then present the consequences for therapies and briefly discuss the role of single-cell approaches for the future progress of the field.

摘要

表观遗传异常在癌症中极为普遍。其中一些仅仅是细胞转化的结果,但有些则积极促进癌症的发生和发展;它们提供了强大的新生物标志物以及新的治疗靶点。在本综述中,我们研究了近期的文献,并聚焦于表观基因组失调的一个特定方面:大规模染色质变化,其会导致DNA甲基化或组蛋白修饰的全局性改变。在简要概述健康细胞中的一维(1D)和三维(3D)表观基因组及其稳态机制之后,我们通过选定的例子来描述许多不同的事件(突变、代谢变化和感染)如何导致表观基因组发生深刻变化并推动癌症发展。然后,我们阐述这些变化对治疗的影响,并简要讨论单细胞方法在该领域未来进展中的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6409/9139990/a601da9e1aef/cancers-14-02384-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6409/9139990/e3ef63f49c91/cancers-14-02384-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6409/9139990/bf69aa6247e2/cancers-14-02384-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6409/9139990/6454f48627c0/cancers-14-02384-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6409/9139990/a601da9e1aef/cancers-14-02384-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6409/9139990/e3ef63f49c91/cancers-14-02384-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6409/9139990/bf69aa6247e2/cancers-14-02384-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6409/9139990/6454f48627c0/cancers-14-02384-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6409/9139990/a601da9e1aef/cancers-14-02384-g004.jpg

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1
Large-Scale Chromatin Rearrangements in Cancer.癌症中的大规模染色质重排
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DNA methylation protects cancer cells against senescence.DNA甲基化可保护癌细胞免于衰老。
Nat Commun. 2025 Jul 1;16(1):5901. doi: 10.1038/s41467-025-61157-7.
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Endometrial tumorigenesis involves epigenetic plasticity demarcating non-coding somatic mutations and 3D-genome alterations.子宫内膜肿瘤发生涉及界定非编码体细胞突变和三维基因组改变的表观遗传可塑性。

本文引用的文献

1
SETDB1 fuels the lung cancer phenotype by modulating epigenome, 3D genome organization and chromatin mechanical properties.SETDB1通过调节表观基因组、三维基因组组织和染色质机械特性来促进肺癌表型。
Nucleic Acids Res. 2022 May 6;50(8):4389-4413. doi: 10.1093/nar/gkac234.
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Nonlinear control of transcription through enhancer-promoter interactions.通过增强子-启动子相互作用的转录非线性控制。
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H3K27me3 conditions chemotolerance in triple-negative breast cancer.
Genome Biol. 2025 May 9;26(1):124. doi: 10.1186/s13059-025-03596-5.
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Epigenetic dynamics of aging and cancer development: current concepts from studies mapping aging and cancer epigenomes.衰老和癌症发展的表观遗传学动态:从衰老和癌症表观基因组图谱研究中得出的当前概念。
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Context-dependent CpG methylation directs cell-specific binding of transcription factor ZBTB38.语境相关的 CpG 甲基化指导转录因子 ZBTB38 的细胞特异性结合。
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Genome-Wide Analysis of Human Long Noncoding RNAs: A Provocative Review.人类长链非编码RNA的全基因组分析:一篇引人深思的综述
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CRISPR in cancer biology and therapy.CRISPR在癌症生物学与治疗中的应用
Nat Rev Cancer. 2022 May;22(5):259-279. doi: 10.1038/s41568-022-00441-w. Epub 2022 Feb 22.
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Lamina-associated domains: Tethers and looseners.核纤层相关结构域:束缚者与解缚者
Curr Opin Cell Biol. 2022 Feb;74:80-87. doi: 10.1016/j.ceb.2022.01.004. Epub 2022 Feb 18.
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Molecular architecture of enhancer-promoter interaction.增强子-启动子相互作用的分子结构。
Curr Opin Cell Biol. 2022 Feb;74:62-70. doi: 10.1016/j.ceb.2022.01.003. Epub 2022 Feb 12.
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Spatial-CUT&Tag: Spatially resolved chromatin modification profiling at the cellular level.空间 CUT&Tag:在细胞水平上进行空间分辨的染色质修饰谱分析。
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Discovery and Mechanism of Small Molecule Inhibitors Selective for the Chromatin-Binding Domains of Oncogenic UHRF1.发现并阐明选择性靶向致癌 UHRF1 染色质结合结构域的小分子抑制剂的作用机制。
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overexpression leads to increased chromatin interactions at super-enhancers and MYC binding sites.过表达导致超级增强子和 MYC 结合位点的染色质相互作用增加。
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