CAS Key Laboratory of Tropical Marine Bio-Resources and Ecology (LMB), Guangdong Provincial Key Laboratory of Applied Marine Biology (LAMB), South China Sea Institute of Oceanology Chinese Academy of Sciences, Guangzhou 510301, China.
University of Chinese Academy of Sciences, Beijing 100049, China.
Genes (Basel). 2022 May 5;13(5):825. doi: 10.3390/genes13050825.
The mitochondrial genome is widely used to study the molecular evolution of and perform phylogenetic analyses on animals. In this study, the complete mitochondrial genome (mitogenome) of was sequenced. The mitogenome was 16,239 bp in length and contained 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and 2 ribosomal RNA genes (rRNAs). The genome composition showed positive AT-skew (0.023) and negative GC-skew (-0.158). The order of the mitochondrial genes was consistent with those from the and species, whereas it was different from those of other species of Aspidochirotida. The phylogenetic analysis, based on the nucleotide sequences of 13 PCGs through the methods of Bayesian inference (BI) and maximum likelihood (ML), indicated that has close relationships with and , and belongs to a member of Stichopodidae. Our study provides a reference mitogenome for further molecular evolution studies and phylogenetic research on sea cucumbers.
线粒体基因组被广泛用于研究动物的分子进化并进行系统发育分析。在本研究中,我们对海参的完整线粒体基因组(mitogenome)进行了测序。该线粒体基因组全长 16239 个碱基对,包含 13 个蛋白编码基因(PCGs)、22 个转移 RNA 基因(tRNAs)和 2 个核糖体 RNA 基因(rRNAs)。基因组组成表现出正的 AT 倾斜(0.023)和负的 GC 倾斜(-0.158)。线粒体基因的排列顺序与海参目和海参科的物种一致,而与其他 Aspidochirotida 物种的排列顺序不同。基于 13 个 PCGs 的核苷酸序列进行贝叶斯推断(BI)和最大似然(ML)的系统发育分析表明,海参与海参和刺参科关系密切,属于刺参科的一员。我们的研究为海参的进一步分子进化研究和系统发育研究提供了参考线粒体基因组。