Shenzhen Key Laboratory of Marine Bioresource and Eco-Environmental Science, Guangdong Engineering Research Center for Marine Algal Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China.
Department of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong 999077, China.
Viruses. 2022 Apr 24;14(5):887. doi: 10.3390/v14050887.
As significant drivers of cyanobacteria mortality, cyanophages have been known to regulate the population dynamics, metabolic activities, and community structure of this most important marine autotrophic picoplankton and, therefore, influence the global primary production and biogeochemical cycle in aquatic ecosystems. In the present study, a lytic phage, namely S-SZBM1, was isolated and identified. Cyanophage S-SZBM1 has a double-stranded DNA genome of 177,834 bp with a G+C content of 43.31% and contains a total of 218 predicted ORFs and six tRNA genes. Phylogenetic analysis and nucleotide-based intergenomic similarity suggested that cyanophage S-SZBM1 belongs to a new genus under the family . A variety of auxiliary metabolic genes (AMGs) that have been proved or speculated to relate to photosynthesis, carbon metabolism, nucleotide synthesis and metabolism, cell protection, and other cell metabolism were identified in cyanophage S-SZBM1 genome and may affect host processes during infection. In addition, 24 of 32 predicted structural proteins were identified by a high-throughput proteome analysis which were potentially involved in the assembly processes of virion. The genomic and proteomic analysis features of cyanophage S-SZBM1 offer a valuable insight into the interactions between cyanophages and their hosts during infection.
作为蓝藻死亡的重要驱动因素,噬藻体被认为可以调节这种最重要的海洋自养微微型浮游植物的种群动态、代谢活动和群落结构,从而影响水生生态系统中的全球初级生产力和生物地球化学循环。在本研究中,分离并鉴定了一种裂解性噬藻体,即 S-SZBM1。噬藻体 S-SZBM1 的双链 DNA 基因组大小为 177834bp,G+C 含量为 43.31%,共包含 218 个预测的 ORF 和 6 个 tRNA 基因。系统发育分析和基于核苷酸的基因组间相似性表明,噬藻体 S-SZBM1 属于. 科下的一个新属。在噬藻体 S-SZBM1 基因组中鉴定到多种辅助代谢基因 (AMGs),这些基因已被证明或推测与光合作用、碳代谢、核苷酸合成和代谢、细胞保护和其他细胞代谢有关,它们可能会在感染过程中影响宿主的进程。此外,通过高通量蛋白质组分析鉴定出 32 个预测结构蛋白中的 24 个,它们可能参与了病毒粒子的组装过程。噬藻体 S-SZBM1 的基因组和蛋白质组分析特征为噬藻体与宿主在感染过程中的相互作用提供了有价值的见解。