Department of Mathematics, University of Manitoba, Winnipeg, MB, Canada.
Cell Polarity, Migration and Cancer Unit, Institut Pasteur, Paris, UMR3691 CNRS. Equipe Labellisée Ligue Contre le Cancer, F-75015 Paris, France.
J Theor Biol. 2022 Aug 21;547:111183. doi: 10.1016/j.jtbi.2022.111183. Epub 2022 Jun 3.
Noise affects all biological processes from molecules to cells, organisms and populations. Although the effect of noise on these processes is highly variable, evidence is accumulating which shows natural stochastic fluctuations (noise) can facilitate biological functions. Herein, we investigate the effect of noise on the transport of intermediate filaments in cells by comparing the stochastic and deterministic formalizations of the bidirectional transport of intermediate filaments, long elastic polymers transported along microtubules by antagonistic motor proteins (Dallon et al., 2019; Portet et al., 2019). By numerically exploring discrepancies in timescales and attractors between both formalizations, we characterize the impact of stochastic fluctuations on the individual and ensemble transport. Biologically, we find that noise promotes the collective movement of intermediate filaments and increases the efficiency of its regulation by the biochemical properties of motor-cargo interactions. While stochastic fluctuations reduce the impact of the initial distributions of motor proteins in cells, the number of binding sites and the affinity of motor-cargo interactions are the key parameters controlling transport efficiency and efficacy.
噪声会影响从分子到细胞、生物个体乃至种群等所有生物过程。尽管噪声对这些过程的影响具有高度可变性,但越来越多的证据表明,自然随机波动(噪声)可以促进生物功能。在此,我们通过比较中间丝的双向运输的随机和确定性形式化,研究了噪声对细胞中间丝运输的影响,长弹性聚合物由微管上的拮抗马达蛋白(Dallon 等人,2019 年;Portet 等人,2019 年)沿其运输。通过数值探索两种形式之间在时间尺度和吸引子上的差异,我们描述了随机波动对个体和整体运输的影响。从生物学角度来看,我们发现噪声促进了中间丝的集体运动,并通过马达-货物相互作用的生化特性提高了其调节效率。虽然随机波动会降低马达蛋白在细胞中初始分布的影响,但结合位点的数量和马达-货物相互作用的亲和力是控制运输效率和效果的关键参数。