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血红素结合酪氨酸振动在血红蛋白 M 中的研究:共振拉曼、晶体学和密度泛函理论计算。

Heme-bound tyrosine vibrations in hemoglobin M: Resonance Raman, crystallography, and DFT calculation.

机构信息

Department of Chemistry, Faculty of Pure and Applied Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.

Center for Computational Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan; JST-PRESTO, Kawaguchi, Saitama, Japan.

出版信息

Biophys J. 2022 Jul 19;121(14):2767-2780. doi: 10.1016/j.bpj.2022.06.012. Epub 2022 Jun 9.

DOI:10.1016/j.bpj.2022.06.012
PMID:35689380
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9382339/
Abstract

Hemoglobins M (Hbs M) are human hemoglobin variants in which either the α or β subunit contains a ferric heme in the αβ tetramer. Though the ferric subunit cannot bind O, it regulates O affinity of its counterpart ferrous subunit. We have investigated resonance Raman spectra of two Hbs, M Iwate (α87His → tyrosine [Tyr]) and M Boston (α58His → Tyr), having tyrosine as a heme axial ligand at proximal and distal positions, respectively, that exhibit unassigned resonance Raman bands arising from ferric (not ferrous) hemes at 899 and 876 cm. Our quantum chemical calculations using density functional theory on Fe-porphyrin models with p-cresol and/or 4-methylimidazole showed that the unassigned bands correspond to the breathing-like modes of Fe-bound Tyr and are sensitive to the Fe-O-C(Tyr) angle. Based on the frequencies of the Raman bands, the Fe-O-C(Tyr) angles of Hbs M Iwate and M Boston were predicted to be 153.5° and 129.2°, respectively. Consistent with this prediction, x-ray crystallographic analysis showed that the Fe-O-C(Tyr) angles of Hbs M Iwate and M Boston in the T quaternary structure were 153.6° and 134.6°, respectively. It also showed a similar Fe-O bond length (1.96 and 1.97 Å) and different tilting angles.

摘要

血红蛋白 M (Hbs M) 是人类血红蛋白变体,其中α或β亚基在αβ四聚体中含有三价血红素。虽然三价亚基不能结合 O,但它调节其亚铁亚基的 O 亲和力。我们研究了两种 Hbs 的共振拉曼光谱,即 Iwate (α87His → tyrosine [Tyr]) 和 Boston (α58His → Tyr) M,它们分别在近侧和远侧位置具有作为血红素轴向配体的酪氨酸,在 899 和 876 cm 处表现出未分配的来自三价(而非亚铁)血红素的共振拉曼带。我们使用密度泛函理论在带有对甲酚和/或 4-甲基咪唑的 Fe-卟啉模型上进行的量子化学计算表明,未分配的带对应于 Fe 结合的 Tyr 的呼吸样模式,并且对 Fe-O-C(Tyr) 角度敏感。基于拉曼带的频率,预测 Hbs M Iwate 和 M Boston 的 Fe-O-C(Tyr) 角度分别为 153.5°和 129.2°。与这一预测一致,X 射线晶体学分析表明,Hbs M Iwate 和 M Boston 在 T 四级结构中的 Fe-O-C(Tyr) 角度分别为 153.6°和 134.6°。它还显示了类似的 Fe-O 键长(1.96 和 1.97 Å)和不同的倾斜角度。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e5f7/9382339/f8dfd02a1e14/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e5f7/9382339/f8dfd02a1e14/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e5f7/9382339/f8dfd02a1e14/fx1.jpg

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2
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Biochim Biophys Acta Bioenerg. 2021 Apr 1;1862(4):148356. doi: 10.1016/j.bbabio.2020.148356. Epub 2020 Dec 29.
3
Reaction mechanism of N-cyclopropylglycine oxidation by monomeric sarcosine oxidase.
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Phys Chem Chem Phys. 2020 Aug 7;22(29):16552-16561. doi: 10.1039/d0cp01679a. Epub 2020 May 26.
4
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