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利用单细胞受体-配体标记分析和分子动力学模拟探索 (L.) Pall. 在慢性肌肉修复模式中的潜在机制。

Exploring the Potential Mechanisms of (L.) Pall. in Chronic Muscle Repair Patterns Using Single Cell Receptor-Ligand Marker Analysis and Molecular Dynamics Simulations.

机构信息

Department of Sports Medicine, Huashan Hospital, Fudan University, Shanghai, China.

Department of Orthopedics, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai Jiao Tong University, Shanghai 200080, China.

出版信息

Dis Markers. 2022 Jun 1;2022:9082576. doi: 10.1155/2022/9082576. eCollection 2022.

DOI:10.1155/2022/9082576
PMID:35692879
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9177293/
Abstract

Information regarding the function of (L.) Pall. in skeletal muscles is still unknown. In this study, we explored the possible regulatory targets of M. (L.) Pall. that affects the repair patterns in chronic muscle injury. We analyzed the potential target genes and chemical composition of M. (L.) Pall. and constructed a "drug-component-disease target genes" network analysis. Five active ingredients and 87 corresponding targets were obtained. Muscle-tendon junction (MTJ) cells were used to perform receptor-ligand marker analysis using the CellphoneDB algorithm. Targets of M. (L.) Pall. were screened further for the cellular ligand-receptor protein action on MTJs. Enrichment analysis suggests that those protein-associated ligand receptors may be associated with a range of intercellular signaling pathways. Molecular docking validation was then performed. Five proteins (CCL2, VEGFA, MMP2, MET, and EGFR) may be regulated by the active ingredient luteolin and scoparone. Finally, molecular dynamics simulations revealed that luteolin can stably target binding to MMP2. M. (L.) Pall. influences skeletal muscle repair patterns by affecting the fibroblast interactions in the muscle-tendon junctions through the active ingredients luteolin and scoparone.

摘要

关于(L.)Pall. 在骨骼肌中的功能的信息仍然未知。在这项研究中,我们探索了可能影响慢性肌肉损伤修复模式的 M.(L.)Pall. 的调节靶点。我们分析了 M.(L.)Pall. 的潜在靶基因和化学成分,并构建了“药物-成分-疾病靶基因”网络分析。得到了 5 种活性成分和 87 个相应的靶点。使用 CellphoneDB 算法对肌肌腱连接(MTJ)细胞进行了受体-配体标记分析。进一步筛选 M.(L.)Pall. 的靶点,以研究 MTJ 上细胞配体-受体蛋白的作用。富集分析表明,这些与蛋白相关的配体受体可能与一系列细胞间信号通路有关。然后进行了分子对接验证。五种蛋白质(CCL2、VEGFA、MMP2、MET 和 EGFR)可能受活性成分木犀草素和菖蒲酮调节。最后,分子动力学模拟表明,木犀草素可以稳定地靶向 MMP2 结合。M.(L.)Pall. 通过影响肌肌腱连接中的成纤维细胞相互作用,通过活性成分木犀草素和菖蒲酮影响骨骼肌肉修复模式。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9177293/7abb6b55472c/DM2022-9082576.007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9177293/97efeed0d29f/DM2022-9082576.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9177293/81d9cf942e3e/DM2022-9082576.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9177293/d042bf3669df/DM2022-9082576.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9177293/81f9c92f2761/DM2022-9082576.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9177293/77d8a952270c/DM2022-9082576.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9177293/01431282d36a/DM2022-9082576.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9177293/7abb6b55472c/DM2022-9082576.007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9177293/97efeed0d29f/DM2022-9082576.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9177293/81d9cf942e3e/DM2022-9082576.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9177293/d042bf3669df/DM2022-9082576.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9177293/81f9c92f2761/DM2022-9082576.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9177293/77d8a952270c/DM2022-9082576.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9177293/01431282d36a/DM2022-9082576.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9177293/7abb6b55472c/DM2022-9082576.007.jpg

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