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L-亮氨酸脱氢酶的晶体结构来自.

The Crystal Structure of L-Leucine Dehydrogenase from .

机构信息

Department of Chemistry, College of Natural Sciences, Soongsil University, Seoul 06978, Korea.

Department of Physics and Integrative Institute of Basic Science, Soongsil University, Seoul 06978, Korea.

出版信息

Mol Cells. 2022 Jul 31;45(7):495-501. doi: 10.14348/molcells.2022.0012. Epub 2022 Jun 14.

Abstract

Leucine dehydrogenase (LDH, EC 1.4.1.9) catalyzes the reversible deamination of branched-chain L-amino acids to their corresponding keto acids using NAD as a cofactor. LDH generally adopts an octameric structure with symmetry, generating a molecular mass of approximately 400 kDa. Here, the crystal structure of the LDH from (-LDH) was determined at 2.5 Å resolution. Interestingly, the crystal structure shows that the enzyme exists as a dimer with symmetry in a crystal lattice. The dimeric structure was also observed in solution using multiangle light scattering coupled with size-exclusion chromatography. The enzyme assay revealed that the specific activity was maximal at 60°C and pH 8.5. The kinetic parameters for three different amino acid and the cofactor (NAD) were determined. The crystal structure represents that the subunit has more compact structure than homologs' structure. In addition, the crystal structure along with sequence alignments indicates a set of non-conserved arginine residues which are important in stability. Subsequent mutation analysis for those residues revealed that the enzyme activity reduced to one third of the wild type. These results provide structural and biochemical insights for its future studies on its application for industrial purposes.

摘要

亮氨酸脱氢酶(LDH,EC 1.4.1.9)在 NAD 作为辅助因子的情况下,催化支链 L-氨基酸的可逆脱氨作用,生成相应的酮酸。LDH 通常采用具有 8 重对称的八聚体结构,产生的分子量约为 400 kDa。本文报道了来自 (-LDH)的 LDH 的晶体结构,分辨率为 2.5 Å。有趣的是,晶体结构显示酶在晶格中以具有 8 重对称的二聚体形式存在。在溶液中使用多角度光散射结合凝胶渗透色谱也观察到了二聚体结构。酶活性测定表明,在 60°C 和 pH 8.5 时,比活性最大。测定了三种不同氨基酸和辅助因子(NAD)的动力学参数。晶体结构表明,亚基的结构比同源物的结构更加紧凑。此外,晶体结构和序列比对表明,一组非保守的精氨酸残基在稳定性方面很重要。对这些残基的突变分析表明,酶活性降低到野生型的三分之一。这些结果为其未来在工业应用方面的研究提供了结构和生化方面的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0870/9260137/1cae6f6fe2db/molce-45-7-495-f1.jpg

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