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小麦胚蛋白衍生抗肽的粘附素结合潜力及ADME/Tox特性的生物信息学分析

Bioinformatics analysis of adhesin-binding potential and ADME/Tox profile of anti- peptides derived from wheat germ proteins.

作者信息

Dang Chi, Okagu Ogadimma, Sun Xiaohong, Udenigwe Chibuike C

机构信息

Department of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, Ontario, K1N 6N5, Canada.

School of Nutrition Sciences, Faculty of Health Sciences, University of Ottawa, Ottawa, Ontario, K1H 8M5, Canada.

出版信息

Heliyon. 2022 Jun 3;8(6):e09629. doi: 10.1016/j.heliyon.2022.e09629. eCollection 2022 Jun.

Abstract

Anti-adhesive activity of wheat germ-derived peptides, which is considered as one of the promising strategies for preventing infection, was investigated. The underlying mechanism of anti-adhesive action was due to peptides acting as receptor analogues and binding to adhesin proteins. However, there is lack of information on the nature and strength of this molecular interaction as well as the participating species and drug-likeness of the food-derived bioactive peptides. In this study, the biostability and ADME/Tox (absorption, distribution, metabolism, excretion and toxicity) profile of the anti-adhesive peptides were analyzed using bioinformatic tools, and their binding potential to 's adhesins estimated by molecular docking. Binding is facilitated by mostly hydrogen bonding and hydrophobic interaction occurring in the active site of the adhesin proteins with affinities ranging from -6.0 to -7.4 and -6.0 to -7.8 kcal/mol for BabA and SabA, respectively. The results indicate highly possible binding capabilities of the peptides to adhesin proteins. Out of 16 peptides studied, 14 bound in the vicinity of the active site of BabA and SabA whereas two different peptides demonstrated allosteric binding. The most hydrophobic peptide, P210 showed strong binding affinity for both BabA and SabA and, therefore, predicted to be the most promising peptide for further development in the prevention, management and treatment of infection. The selected peptides were shown to be non-toxic, and to have high potential of localized effect of interfering with bacterial adherence. This work provides insights into the anti-adhesive mechanism of peptides and new evidence demonstrating bioactive peptides as promising nutraceutical candidates for preventing infection.

摘要

对小麦胚芽衍生肽的抗黏附活性进行了研究,这被认为是预防感染的一种有前景的策略。抗黏附作用的潜在机制是肽作为受体类似物与黏附素蛋白结合。然而,关于这种分子相互作用的性质和强度以及食品衍生生物活性肽的参与种类和类药性质缺乏相关信息。在本研究中,使用生物信息学工具分析了抗黏附肽的生物稳定性和ADME/Tox(吸收、分布、代谢、排泄和毒性)概况,并通过分子对接估计了它们与幽门螺杆菌黏附素的结合潜力。结合主要通过黏附素蛋白活性位点中发生的氢键和疏水相互作用来促进,对于BabA和SabA,亲和力分别为-6.0至-7.4 kcal/mol和-6.0至-7.8 kcal/mol。结果表明这些肽与黏附素蛋白具有高度可能的结合能力。在所研究的16种肽中,有14种在BabA和SabA活性位点附近结合,而两种不同的肽表现出别构结合。最疏水的肽P210对BabA和SabA都表现出强烈的结合亲和力,因此预计是预防、管理和治疗幽门螺杆菌感染进一步开发中最有前景的肽。所选肽显示无毒,并且具有干扰细菌黏附的局部作用的高潜力。这项工作深入了解了肽的抗黏附机制,并提供了新的证据,证明生物活性肽作为预防幽门螺杆菌感染的有前景的营养保健品候选物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdc1/9189888/e5d102801920/gr1.jpg

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