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通过跟踪端粒来探测局部染色质动力学。

Probing local chromatin dynamics by tracking telomeres.

机构信息

Experimental Physics I, University of Bayreuth, Bayreuth, Germany.

Experimental Physics I, University of Bayreuth, Bayreuth, Germany.

出版信息

Biophys J. 2022 Jul 19;121(14):2684-2692. doi: 10.1016/j.bpj.2022.06.020. Epub 2022 Jun 22.

Abstract

Chromatin dynamics is key for cell viability and replication. In interphase, chromatin is decondensed, allowing the transcription machinery to access a plethora of DNA loci. Yet, decondensed chromatin occupies almost the entire nucleus, suggesting that DNA molecules can hardly move. Recent reports have even indicated that interphase chromatin behaves like a solid body on mesoscopic scales. To explore the local chromatin dynamics, we have performed single-particle tracking on telomeres under varying conditions. We find that mobile telomeres feature, under all conditions, a strongly subdiffusive, antipersistent motion that is consistent with the monomer motion of a Rouse polymer in viscoelastic media. In addition, telomere trajectories show intermittent accumulations in local niches at physiological conditions, suggesting that the surrounding chromatin reorganizes on these timescales. Reducing the temperature or exposing cells to osmotic stress resulted in a significant reduction of mobile telomeres and the number of visited niches. Altogether, our data indicate a vivid local chromatin dynamics, akin to a semidilute polymer solution, unless perturbations enforce a more rigid or entangled state of chromatin.

摘要

染色质动力学对于细胞活力和复制至关重要。在间期,染色质解凝聚,允许转录机制访问大量的 DNA 位点。然而,解凝聚的染色质几乎占据了整个细胞核,这表明 DNA 分子几乎不能移动。最近的报道甚至表明,间期染色质在介观尺度上表现得像一个固体物体。为了探索局部染色质动力学,我们在不同条件下对端粒进行了单粒子跟踪。我们发现,在所有条件下,移动的端粒都表现出强烈的亚扩散、反持久运动,这与粘弹性介质中 Rouse 聚合物的单体运动一致。此外,端粒轨迹在生理条件下会在局部小生境中出现间歇性积聚,这表明周围的染色质在这些时间尺度上重新组织。降低温度或使细胞暴露在渗透压应激下会导致可移动端粒和访问小生境数量的显著减少。总的来说,我们的数据表明存在活跃的局部染色质动力学,类似于半稀聚合物溶液,除非扰动迫使染色质处于更刚性或缠结的状态。

相似文献

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Probing local chromatin dynamics by tracking telomeres.通过跟踪端粒来探测局部染色质动力学。
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Chromatin: Liquid or Solid?染色质:液态还是固态?
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Chromatin Viscoelasticity Measured by Local Dynamic Analysis.通过局部动态分析测量染色质粘弹性能。
Biophys J. 2020 May 5;118(9):2258-2267. doi: 10.1016/j.bpj.2020.04.002. Epub 2020 Apr 14.
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Hyperosmotic stress: chromatin phase separation.高渗应激:染色质相分离。
Nucleus. 2020 Dec;11(1):1-18. doi: 10.1080/19491034.2019.1710321.
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Organization of Chromatin by Intrinsic and Regulated Phase Separation.染色质的固有和调控相分离组织。
Cell. 2019 Oct 3;179(2):470-484.e21. doi: 10.1016/j.cell.2019.08.037. Epub 2019 Sep 19.
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Chromosomal locus tracking with proper accounting of static and dynamic errors.对静态和动态误差进行适当考量的染色体位点追踪。
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