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生物信息学方法预测 SARS-CoV-2 感染 COPD 患者的候选靶点。

Bioinformatics Approach Predicts Candidate Targets for SARS-CoV-2 Infections to COPD Patients.

机构信息

Department of Pulmonary and Critical Care Medicine, Jinan University First Affiliated Hospital, Guangzhou 510630, China.

Department of Endocrinology, Guangzhou Red Cross Hospital, Jinan University, Guangzhou 510220, China.

出版信息

Biomed Res Int. 2022 Jun 21;2022:1806427. doi: 10.1155/2022/1806427. eCollection 2022.

Abstract

COVID-19 is still prevalent in more world regions and poses a severe threat to human health due to its high pathogenicity. The incidence of COPD patients is gradually increasing, especially in patients over 45 years old. COPD patients are susceptible to COVID-19 due to the specific lung receptor ACE2 of SARS-CoV-2. We attempt to reveal the genetic basis by analyzing the expression of common DEGs of the two diseases through bioinformatics approaches and find potential therapeutic agents based on the target genes. Thus, we search the GEO database for COVID-19 and COPD transcriptomic gene expression. We also study the enrichment of signaling regulatory pathways and hub genes for potential therapeutic treatments. There are 34 common DEGs in the two datasets. The signaling pathways are mainly enriched in intercellular junctions between virus and cytokine regulation. In the PPI network of common DEGs, we extract 5 hub genes. We find that artesunate CTD 00001840, dexverapamil MCF7 UP, and STOCK1N-35696 PC3 DOWN could be therapeutic agents for both diseases. We also analyze the regulatory network of differential genes with transcription factors and miRNAs. Therefore, we conclude that artesunate CTD 00001840, dexverapamil MCF7 UP, and STOCK1N-35696 PC3 DOWN can be therapeutic candidates in COPD combined with COVID-19.

摘要

新型冠状病毒肺炎(COVID-19)在更多的世界区域仍然流行,由于其高致病性,对人类健康构成严重威胁。COPD 患者的发病率逐渐增加,尤其是 45 岁以上的患者。由于 SARS-CoV-2 的肺特异性受体 ACE2,COPD 患者易感染 COVID-19。我们试图通过生物信息学方法分析两种疾病常见差异表达基因(DEGs)的表达来揭示遗传基础,并基于靶基因找到潜在的治疗剂。因此,我们在 GEO 数据库中搜索 COVID-19 和 COPD 转录组基因表达。我们还研究了信号调节通路和潜在治疗的关键基因的富集。两个数据集有 34 个共同的 DEGs。信号通路主要富集在病毒和细胞因子调节之间的细胞间连接中。在共同 DEGs 的 PPI 网络中,我们提取了 5 个关键基因。我们发现青蒿琥酯 CTD 00001840、右丙氧芬 MCF7 UP 和 STOCK1N-35696 PC3 DOWN 可能是两种疾病的治疗药物。我们还分析了差异基因与转录因子和 microRNA 的调控网络。因此,我们得出结论,青蒿琥酯 CTD 00001840、右丙氧芬 MCF7 UP 和 STOCK1N-35696 PC3 DOWN 可能是 COVID-19 合并 COPD 的治疗候选药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf79/9211381/a299659ab1de/BMRI2022-1806427.001.jpg

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