Department of Biointerface Chemistry, Faculty of Pharmaceutical Sciences, University of Toyama, Sugitani 2630, Toyama 930-0194, Japan.
Artificial Intelligence Research Center, National Institute of Advanced Industrial Science and Technology (AIST), 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan.
J Phys Chem Lett. 2022 Jul 7;13(26):6031-6036. doi: 10.1021/acs.jpclett.2c01065. Epub 2022 Jun 24.
The kinetic mechanism of amyloid fibril formation by a peptide fragment containing seven residues of the amyloid-β protein Aβ-(16-22) was investigated. We found that the N- and C-terminal unprotected Aβ-(16-22), containing no aggregation nuclei, showed rapid fibrillation within seconds to minutes in a neutral aqueous buffer solution. The fibrillation kinetics were well described by the nucleation-elongation model, suggesting that primary nucleation was the rate-limiting step. On the basis of both experimental and theoretical analyses, the aggregated nucleus was estimated to be composed of 6-7 peptide molecules, wherein the two β-sheets were associated with their hydrophobic surfaces. Thin fibers with widths of 10-20 nm were formed, which increased their length and thickness, attaining a width of >20 nm over several tens of minutes, probably owing to the lateral association of the fibers. Electrostatic and hydrophobic interactions play important roles in aggregation. These results provide a basis for understanding the fibrillation of short peptides.
我们研究了含有淀粉样蛋白β蛋白 Aβ-(16-22) 七个残基的肽片段形成淀粉样纤维的动力学机制。我们发现,N-和 C-端未保护的 Aβ-(16-22),没有聚集核,在中性水性缓冲溶液中几秒钟到几分钟内迅速形成纤维。纤维形成的动力学很好地符合成核-延伸模型,表明初级成核是限速步骤。基于实验和理论分析,估计聚集核由 6-7 个肽分子组成,其中两个β-折叠片与它们的疏水面相关联。形成宽度为 10-20nm 的细纤维,这些纤维增加其长度和厚度,在几十分钟内达到 >20nm 的宽度,可能是由于纤维的侧向缔合。静电和疏水相互作用在聚集过程中起重要作用。这些结果为理解短肽的纤维化提供了基础。