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解析二维大分子的形态复杂性。

Unraveling the morphological complexity of two-dimensional macromolecules.

作者信息

Zhao Yingjie, Qin Jianshu, Wang Shijun, Xu Zhiping

机构信息

Applied Mechanics Laboratory, Department of Engineering Mechanics and Center for Nano and Micro Mechanics, Tsinghua University, Beijing 100084, China.

出版信息

Patterns (N Y). 2022 Apr 22;3(6):100497. doi: 10.1016/j.patter.2022.100497. eCollection 2022 Jun 10.

Abstract

2D macromolecules, such as graphene and graphene oxide, possess a rich spectrum of conformational phases. However, their morphological classification has only been discussed by visual inspection, where the physics of deformation and surface contact cannot be resolved. We employ machine learning methods to address this problem by exploring samples generated by molecular simulations. Features such as metric changes, curvature, conformational anisotropy and surface contact are extracted. Unsupervised learning classifies the morphologies into the quasi-flat, folded, crumpled phases and interphases using geometrical and topological labels or the principal features of the 2D energy map. The results are fed into subsequent supervised learning for phase characterization. The performance of data-driven models is improved notably by integrating the physics of geometrical deformation and topological contact. The classification and feature extraction characterize the microstructures of their condensed phases and the molecular processes of adsorption and transport, comprehending the processing-microstructures-performance relation in applications.

摘要

二维大分子,如石墨烯和氧化石墨烯,具有丰富的构象相谱。然而,它们的形态分类仅通过目视检查进行讨论,其中变形和表面接触的物理过程无法得到解决。我们采用机器学习方法,通过探索分子模拟生成的样本,来解决这个问题。提取诸如度量变化、曲率、构象各向异性和表面接触等特征。无监督学习使用几何和拓扑标签或二维能量图的主要特征,将形态分类为准平坦、折叠、褶皱相和中间相。结果被输入到后续的监督学习中进行相表征。通过整合几何变形和拓扑接触的物理过程,数据驱动模型的性能得到了显著提高。分类和特征提取表征了它们凝聚相的微观结构以及吸附和传输的分子过程,理解了应用中的加工-微观结构-性能关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e076/9214330/11d051568dc8/fx1.jpg

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