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(凤尾藓科,灰藓目)的完整叶绿体基因组。

The complete chloroplast genome of (Pterobryaceae, Hypnales).

作者信息

Han Wei, Yu Ningning, Jia Yu

机构信息

Medical Plant Exploitation and Utilization Engineering Research Center, Sanming University, Fujian, China.

Fujian Provincial Key Laboratory of Resources and Environment Monitoring and Sustainable Management and Utilization, Sanming University, Fujian, China.

出版信息

Mitochondrial DNA B Resour. 2022 Jun 14;7(6):1046-1047. doi: 10.1080/23802359.2022.2082893. eCollection 2022.

DOI:10.1080/23802359.2022.2082893
PMID:35756433
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9225731/
Abstract

In this study, the complete chloroplast chloroplast genome of was studied and reported. The size of the entire chloroplast genome was 124,401bp in length, comprising of two inverted repeats (IRa and IRb, 9371 bp respectively) separated by one large single copy (LSC: 87,126 bp) and one small single copy (SSC: 18,533 bp). The GC content of the genome sequence was 41.28%. A total of 126 functional genes were predicted, consisting of 82 protein-coding genes, 36 tRNA genes, and eight rRNA genes. Phylogenetic analysis showed that the two Pterobryaceae species and clustered in one clade, which is sister to the Theliaceae species .

摘要

在本研究中,对[物种名称]的完整叶绿体基因组进行了研究和报道。整个叶绿体基因组长度为124,401bp,由两个反向重复序列(IRa和IRb,分别为9371bp)组成,中间被一个大单拷贝(LSC:87,126bp)和一个小单拷贝(SSC:18,533bp)隔开。基因组序列的GC含量为41.28%。共预测到126个功能基因,包括82个蛋白质编码基因、36个tRNA基因和8个rRNA基因。系统发育分析表明,两种蕨藓科物种[物种名称1]和[物种名称2]聚在一个分支中,该分支是茶藓科物种[物种名称3]的姐妹分支。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bb7/9225731/cfd8f1729494/TMDN_A_2082893_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bb7/9225731/cfd8f1729494/TMDN_A_2082893_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bb7/9225731/cfd8f1729494/TMDN_A_2082893_F0001_C.jpg

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本文引用的文献

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NOVOWrap: An automated solution for plastid genome assembly and structure standardization.NOVOWrap:一种用于质体基因组组装和结构标准化的自动化解决方案。
Mol Ecol Resour. 2021 Aug;21(6):2177-2186. doi: 10.1111/1755-0998.13410. Epub 2021 May 25.
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GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
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Nucleic Acids Res. 2016 Jul 8;44(W1):W232-5. doi: 10.1093/nar/gkw256. Epub 2016 Apr 15.
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