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结构生物学如何直接影响我们对 P2X 受体功能和门控的理解。

How Structural Biology Has Directly Impacted Our Understanding of P2X Receptor Function and Gating.

机构信息

Department of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, OR, USA.

Knight Cardiovascular Institute, Oregon Health & Science University, Portland, OR, USA.

出版信息

Methods Mol Biol. 2022;2510:1-29. doi: 10.1007/978-1-0716-2384-8_1.

Abstract

P2X receptors are ATP-gated ion channels expressed in a wide variety of eukaryotic cells. They play key roles in diverse processes such as platelet activation, smooth muscle contraction, synaptic transmission, nociception, cell proliferation, and inflammation making this receptor family an important pharmacological target. Structures of P2X receptors solved by X-ray crystallography have been instrumental in helping to define mechanisms of molecular P2X receptor function. In 2009, the first X-ray structure of the P2X4 receptor subtype confirmed a trimeric stoichiometry and revealed the overall architecture of the functional ion channel. Subsequent X-ray structures have provided the molecular details to define the orthosteric ATP binding pocket, the orthosteric antagonist binding pocket, an allosteric antagonist binding pocket, and the pore architecture in each of the major conformational states of the receptor gating cycle. Moreover, the unique gating mechanism by which P2X receptor subtypes desensitize at differing rates, referred to as the helical recoil model of receptor desensitization, was discovered directly from X-ray structures of the P2X3 receptor. However, structures of P2X receptors solved by X-ray crystallography have only been able to provide limited information on the cytoplasmic domain of this receptor family, as this domain was always truncated to varying degrees in order to facilitate crystallization. Because the P2X7 receptor subtype has a significantly larger cytoplasmic domain that has been shown to be necessary for its ability to initiate apoptosis, an absence of structural information on the P2X7 receptor cytoplasmic domain has limited our understanding of its complex signaling pathways as well as its unusual ability to remain open without undergoing desensitization. This absence of cytoplasmic structural information for P2X7 receptors was recently overcome when the first full-length P2X7 receptor structures were solved by single-particle cryogenic electron microscopy. These structures finally provide insight into the large and unique P2X7 receptor cytoplasmic domain and revealed two novel structural elements and several surprising findings: first, a cytoplasmic structural element called the cytoplasmic ballast was identified that contains a dinuclear zinc ion complex and a high affinity guanosine nucleotide binding site and second, a palmitoylated membrane proximal structural element called the C-cys anchor was identified which prevents P2X7 receptor desensitization. This chapter will highlight the major structural and functional aspects of P2X receptors discovered through structural biology, with a key emphasis on the most recent cryogenic electron microscopy structures of the full-length, wild-type P2X7 receptor.

摘要

P2X 受体是一种在各种真核细胞中表达的 ATP 门控离子通道。它们在多种过程中发挥关键作用,如血小板激活、平滑肌收缩、突触传递、伤害感受、细胞增殖和炎症,使这个受体家族成为一个重要的药理学靶点。通过 X 射线晶体学解析的 P2X 受体结构有助于帮助定义分子 P2X 受体功能的机制。2009 年,第一个 P2X4 受体亚基的 X 射线结构证实了三聚体的化学计量,并揭示了功能性离子通道的整体结构。随后的 X 射线结构提供了分子细节,定义了正位 ATP 结合口袋、正位拮抗剂结合口袋、别构拮抗剂结合口袋以及受体门控循环的每个主要构象状态中的孔结构。此外,通过 X 射线结构直接发现了 P2X 受体亚基以不同速率脱敏的独特门控机制,称为受体脱敏的螺旋回弹模型。然而,通过 X 射线晶体学解析的 P2X 受体结构仅能够提供该受体家族细胞内域的有限信息,因为该域在结晶过程中总是被截断到不同程度。由于 P2X7 受体亚基具有较大的细胞内域,这对于其启动细胞凋亡的能力是必需的,因此缺乏 P2X7 受体细胞内域的结构信息限制了我们对其复杂信号通路的理解,以及其异常的无需脱敏即可持续开放的能力。当通过单颗粒低温电子显微镜首次解析全长 P2X7 受体结构时,这种缺乏 P2X7 受体细胞质结构信息的情况最近得到了克服。这些结构最终提供了对大而独特的 P2X7 受体细胞内域的深入了解,并揭示了两个新的结构元素和几个令人惊讶的发现:首先,鉴定了一种称为细胞质压载的细胞质结构元素,它包含一个双核锌离子复合物和一个高亲和力鸟嘌呤核苷酸结合位点;其次,鉴定了一种棕榈酰化的膜近端结构元素,称为 C-cys 锚,它可以防止 P2X7 受体脱敏。本章将重点介绍通过结构生物学发现的 P2X 受体的主要结构和功能方面,重点介绍全长野生型 P2X7 受体的最新低温电子显微镜结构。

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