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用系统生物学图形符号表示系统生物学信息的设计考虑。

Design considerations for representing systems biology information with the Systems Biology Graphical Notation.

机构信息

Department of Computer and Information Science, University of Konstanz, Konstanz, Germany.

Faculty of Information Technology, Monash University, Clayton, Australia.

出版信息

J Integr Bioinform. 2022 Jul 4;19(2):20220024. doi: 10.1515/jib-2022-0024.

Abstract

Visual representations are commonly used to explore, analyse, and communicate information and knowledge in systems biology and beyond. Such visualisations not only need to be accurate but should also be aesthetically pleasing and informative. Using the example of the Systems Biology Graphical Notation (SBGN) we will investigate design considerations for graphically presenting information from systems biology, in particular regarding the use of glyphs for types of information, the style of graph layout for network representation, and the concept of bricks for visual network creation.

摘要

可视化表示通常用于探索、分析和交流系统生物学及其他领域的信息和知识。这些可视化不仅需要准确,还应该具有美感和信息量。我们将以系统生物学图形表示法(SBGN)为例,研究用于图形化呈现系统生物学信息的设计考虑因素,特别是关于用于信息类型的符号、网络图表示的图形布局样式以及用于可视化网络创建的积木概念。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79ab/9377698/e8f7602d9cc7/j_jib-2022-0024_fig_001.jpg

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