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开发语义增强图形库作为生物医学信息系统的视觉标准。

Developing libraries of semantically-augmented graphics as visual standards for biomedical information systems.

作者信息

Clarkson Melissa D, Roggenkamp Steven, Detwiler Landon T

机构信息

Division of Biomedical Informatics, University of Kentucky, Multidisciplinary Science Building, Room 230C, Lexington, KY 40506, USA.

出版信息

J Biomed Inform. 2025 Mar;163:104804. doi: 10.1016/j.jbi.2025.104804. Epub 2025 Feb 16.

Abstract

OBJECTIVE

Visual representations generally serve as supplements to information, rather than as bearers of computable information themselves. Our objective is to develop a method for creating semantically-augmented graphic libraries that will serve as visual standards and can be implemented as visual assets in intelligent information systems.

METHODS

Graphics were developed using a composable approach and specified using SVG. OWL was used to represent the entities of our system, which include elements, units, graphics, graphic libraries, and library collections. A graph database serves as our data management system. Semantics are applied at multiple levels: (a) each element is associated with a semantic style class to link visual style to semantic meaning, (b) graphics are described using object properties and data properties, (c) relationships are specified between graphics, and (d) mappings are made between the graphics and outside resources.

RESULTS

The Graphic Library web application enables users to browse the libraries, view information pages for each graphic, and download individual graphics. We demonstrate how SPARQL can be employed to query the graphics database and the APIs can be used to retrieve the graphics and associated data for applications. In addition, this work shows that our method of designing composable graphics is well-suited to depicting variations in human anatomy.

CONCLUSION

This work provides a bridge between visual communication and the field of knowledge representation. We demonstrate a method for creating visual standards that are compatible with practices in biomedical ontology and implement a system for making them accessible to information systems.

摘要

目的

视觉表征通常作为信息的补充,而非可计算信息的承载者。我们的目标是开发一种创建语义增强图形库的方法,该图形库将作为视觉标准,并可在智能信息系统中作为视觉资产来实施。

方法

使用可组合方法开发图形,并使用SVG进行指定。OWL用于表示我们系统的实体,包括元素、单元、图形、图形库和库集合。图形数据库用作我们的数据管理系统。语义在多个层面应用:(a)每个元素与一个语义样式类相关联,以将视觉样式与语义含义联系起来;(b)使用对象属性和数据属性描述图形;(c)指定图形之间的关系;(d)在图形与外部资源之间进行映射。

结果

图形库Web应用程序使用户能够浏览库、查看每个图形的信息页面并下载单个图形。我们展示了如何使用SPARQL查询图形数据库,以及如何使用API为应用程序检索图形和相关数据。此外,这项工作表明我们设计可组合图形的方法非常适合描绘人体解剖结构的变化。

结论

这项工作在视觉通信和知识表示领域之间架起了一座桥梁。我们展示了一种创建与生物医学本体实践兼容的视觉标准的方法,并实现了一个使信息系统能够访问这些标准的系统。

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