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中国一起新型肠炎暴发的流行病学和全基因组测序分析。

Epidemiological and Whole-Genome Sequencing Analysis of a Gastroenteritis Outbreak Caused by a New Emerging Serotype of in China.

机构信息

Zhejiang Provincial Center for Disease Control and Prevention, Hangzhou, China.

Huzhou Center for Disease Control and Prevention, Huzhou, China.

出版信息

Foodborne Pathog Dis. 2022 Aug;19(8):550-557. doi: 10.1089/fpd.2022.0002. Epub 2022 Jul 5.

Abstract

is an important foodborne pathogen with diverse serotypes. In May 2021, we investigated a gastroenteritis outbreak that occurred in China, caused by O10:K4 infection. Based on the epidemiological curve, this outbreak was identified as a homologous exposure event. A case-control study demonstrated that emperor crab with mashed garlic (odds ratio [OR] = 4.60,  = 0.030; 95% confidence interval [95% CI]: 1.11-19.14), goose liver geoduck (OR = 4.50,  = 0.029; 95% CI: 1.12-18.13), shrimp (OR = 4.89,  = 0.021; 95% CI: 1.22-19.65), and sea cucumber (OR = 7.36,  = 0.005; 95% CI: 1.68-32.26) were the potential sources of the food poisoning. isolates from 18 laboratory-confirmed cases were all serotyped O10:K4, and determined to be sequence type ST3 via multilocus sequence typing. Pulsed field gel electrophoresis and whole-genome sequencing analysis revealed the identical pattern and 0-2 single nucleotide variation among these isolates. was positive in all isolates, while and Orf8 were absent. Seven essential base positions in for pandemic clone identification were identical between the O10:K4 and O3:K6 pandemic clones. Phylogenetic analysis with 45 additional genomes of 13 different serotypes showed the closest genetic relationship between O10:K4 and O1: KUT. O10:K4 was thought to evolve from the O3:K6 pandemic clone. The new serovariant of O3:K6 poses a challenge for the prevention and control of disease outbreaks, or even epidemics, in the future.

摘要

是一种重要的食源性致病菌,具有多种血清型。2021 年 5 月,我们调查了一起在中国发生的由 O10:K4 感染引起的胃肠炎暴发事件。根据流行病学曲线,该暴发被确定为同源暴露事件。病例对照研究表明,蒜泥帝王蟹(比值比[OR] = 4.60, = 0.030;95%置信区间[95%CI]:1.11-19.14)、鹅肝象拔蚌(OR = 4.50, = 0.029;95%CI:1.12-18.13)、虾(OR = 4.89, = 0.021;95%CI:1.22-19.65)和海参(OR = 7.36, = 0.005;95%CI:1.68-32.26)是食源性中毒的潜在来源。从 18 例实验室确诊病例中分离出的 均为 O10:K4 血清型,通过多位点序列分型确定为 ST3 型。脉冲场凝胶电泳和全基因组测序分析显示,这些分离株的图谱完全一致,只有 0-2 个单核苷酸变异。所有分离株均为 阳性,而 缺失,Orf8 也缺失。O10:K4 与 O3:K6 大流行克隆鉴定的 7 个必需碱基位置完全相同。对 13 种不同血清型的 45 个附加基因组的系统发育分析表明,O10:K4 与 O1:KUT 之间的遗传关系最为密切。O10:K4 被认为是从 O3:K6 大流行克隆进化而来的。O3:K6 的新血清型变体给未来的 疾病暴发甚至流行的防控带来了挑战。

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