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通过16S rDNA测序对宏基因组中能够高效降解氯嘧磺隆的微生物群落L1进行特征分析。

Characterizing the Microbial Consortium L1 Capable of Efficiently Degrading Chlorimuron-Ethyl Metagenome Combining 16S rDNA Sequencing.

作者信息

Li Xiang, Lu Changming, Dai Yumeng, Yu Zhixiong, Gu Wu, Li Tingting, Li Xinyu, Li Xu, Wang Xiujuan, Su Zhencheng, Xu Mingkai, Zhang Huiwen

机构信息

Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, China.

University of Chinese Academy of Sciences, Beijing, China.

出版信息

Front Microbiol. 2022 Jun 23;13:912312. doi: 10.3389/fmicb.2022.912312. eCollection 2022.

Abstract

Excessive application of the herbicide chlorimuron-ethyl (CE) severely harms subsequent crops and poses severe risks to environmental health. Therefore, methods for efficiently decreasing and eliminating CE residues are urgently needed. Microbial consortia show potential for bioremediation due to their strong metabolic complementarity and synthesis. In this study, a microbial consortium entitled L1 was enriched from soil contaminated with CE by a "top-down" synthetic biology strategy. The consortium could degrade 98.04% of 100 mg L CE within 6 days. We characterized it from the samples at four time points during the degradation process and a sample without degradation activity metagenome and 16S rDNA sequencing. The results revealed 39 genera in consortium L1, among which (34.31%), (28.60%), and (7.01%) showed relatively high abundances. Temporal succession and the loss of degradability did not alter the diversity and community composition of L1 but changed the community structure. Taxon-functional contribution analysis predicted that glutathione transferase [EC 2.5.1.18], urease [EC 3.5.1.5], and allophanate hydrolase [EC 3.5.1.54] are relevant for the degradation of CE and that , and were the main degrading genera. The degradation pathway of CE by L1 may involve cleavage of the CE carbamide bridge to produce 2-amino-4-chloro-6-methoxypyrimidine and ethyl o-sulfonamide benzoate. The results of network analysis indicated close interactions, cross-feeding, and co-metabolic relationships between strains in the consortium, and most of the above six degrading genera were keystone taxa in the network. Additionally, the degradation of CE by L1 required not only "functional bacteria" with degradation capacity but also "auxiliary bacteria" without degradation capacity but that indirectly facilitate/inhibit the degradation process; however, the abundance of "auxiliary bacteria" should be controlled in an appropriate range. These findings improve the understanding of the synergistic effects of degrading bacterial consortia, which will provide insight for isolating degrading bacterial resources and constructing artificial efficient bacterial consortia. Furthermore, our results provide a new route for pollution control and biodegradation of sulfonylurea herbicides.

摘要

过量施用除草剂氯嘧磺隆(CE)会严重损害后续作物,并对环境健康构成严重风险。因此,迫切需要高效降低和消除CE残留的方法。微生物群落因其强大的代谢互补性和合成能力而在生物修复方面显示出潜力。在本研究中,通过“自上而下”的合成生物学策略从受CE污染的土壤中富集了一个名为L1的微生物群落。该群落能够在6天内降解100 mg/L CE中的98.04%。我们在降解过程中的四个时间点以及一个无降解活性的样品上对其进行了宏基因组和16S rDNA测序表征。结果显示,群落L1中有39个属,其中(34.31%)、(28.60%)和(7.01%)的丰度相对较高。时间演替和降解能力的丧失并未改变L1的多样性和群落组成,但改变了群落结构。分类单元功能贡献分析预测,谷胱甘肽转移酶[EC 2.5.1.18]、脲酶[EC 3.5.1.5]和脲基甲酸酯水解酶[EC 3.5.1.54]与CE的降解相关,并且、和是主要的降解属。L1对CE的降解途径可能涉及CE脲桥的断裂,生成2-氨基-4-氯-6-甲氧基嘧啶和邻磺酰胺苯甲酸乙酯。网络分析结果表明,该群落中的菌株之间存在密切的相互作用、交叉喂养和共代谢关系,上述六个降解属中的大多数是网络中的关键分类单元。此外,L1对CE的降解不仅需要具有降解能力的“功能细菌”,还需要没有降解能力但间接促进/抑制降解过程的“辅助细菌”;然而,“辅助细菌”的丰度应控制在适当范围内。这些发现增进了对降解细菌群落协同效应的理解,这将为分离降解细菌资源和构建人工高效细菌群落提供思路。此外,我们的结果为磺酰脲类除草剂的污染控制和生物降解提供了一条新途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0d1/9260513/c11c4dfd45ca/fmicb-13-912312-g0001.jpg

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