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可编程基因组编辑工具的工程与设计。

Engineering and Design of Programmable Genome Editors.

机构信息

Department of Biotechnology, GITAM, Visakhapatnam, India 530045.

出版信息

J Phys Chem B. 2022 Jul 21;126(28):5140-5150. doi: 10.1021/acs.jpcb.2c03761. Epub 2022 Jul 12.

Abstract

Programmable genome editors are enzymes that can be targeted to a specific location in the genome for making site-specific alterations or deletions. The engineering, design, and development of sequence-specific editors has resulted in a dramatic increase in the precision of editing for nucleotide sequences. These editors can target specific locations in a genome, . The genome editors are being deployed for the development of genetically modified organisms for agriculture and industry, and for gene therapy of inherited human genetic disorders, cancer, and immunotherapy. Experimental and computational studies of structure, binding, activity, dynamics, and folding, reviewed here, have provided valuable insights that have the potential for increasing the functional efficiency of these gene/genome editors. Biochemical and biophysical studies of the specificities of natural and engineered genome editors reveal that increased binding affinity can be detrimental because of the increase of off-target effects and that the engineering and design of genome editors with higher specificity may require modulation and control of the conformational dynamics.

摘要

可编程基因组编辑工具是能够靶向基因组中特定位置的酶,以实现特定位置的改变或缺失。序列特异性编辑工具的工程设计和开发显著提高了核苷酸序列编辑的精确性。这些编辑工具可以靶向基因组中的特定位置,。基因组编辑工具正在被用于开发农业和工业用的转基因生物,以及用于遗传性人类遗传疾病、癌症和免疫疗法的基因治疗。本文回顾了对结构、结合、活性、动力学和折叠的实验和计算研究,为提高这些基因/基因组编辑工具的功能效率提供了有价值的见解。对天然和工程化基因组编辑工具特异性的生化和生物物理研究表明,结合亲和力的增加可能是有害的,因为会增加脱靶效应,而具有更高特异性的基因组编辑工具的工程设计和开发可能需要调节和控制构象动力学。

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