College of Stomatology, Chongqing Medical University, Chongqing, China.
Chongqing Municipal Key Laboratory of Oral Biomedical Engineering of Higher Education, Chongqing, China.
J Periodontal Res. 2022 Oct;57(5):977-990. doi: 10.1111/jre.13035. Epub 2022 Jul 15.
Published studies proved that both pyroptosis and periodontitis owned a substantial relationship with immunity, and recent research revealed a solid correlation between periodontitis and pyroptosis. While abundant findings have confirmed pyroptosis has a strong impact on the tumor microenvironment, the function of pyroptosis in influencing the periodontitis immune microenvironment remains poorly understood. Thus, we aimed to identify pyroptosis-related genes whose expression signature can well discriminate periodontitis from healthy controls and to comprehend the role of pyroptosis in the periodontitis immune microenvironment.
The periodontitis-related datasets were acquired from the Gene Expression Omnibus (GEO) database. A series of bioinformatics analyses were conducted to investigate the underlying mechanism of pyroptosis in the periodontitis immune microenvironment. Infiltrating immunocytes, immunological reaction gene sets, and the human leukocyte antigen (HLA) gene were all investigated as potential linkages between periodontitis immune microenvironment and pyroptosis.
Twenty-one pyroptosis-related genes were dysregulated. A four-mRNA combined classification model was constructed, and the receiver operating characteristic (ROC) curve analysis demonstrated its prominent classification capabilities. Subsequently, the mRNA levels of the four hub markers (CYCS, CASP3, NOD2, CHMP4B) were validated by quantitative real-time PCR (qRT-PCR). The correlation coefficients between each hub gene and immune characteristics were calculated, and CASP3 exhibited the most significant correlations with the immune characteristics. Furthermore, distinct pyroptosis-related expression patterns were revealed, along with immunological features of each pattern. Afterward, we discovered 1868 pyroptosis phenotype-related genes, 134 of which were related to immunity. According to the functional enrichment analysis, these 134 genes were closely related to cytokine signaling in immune system, and defense response. Finally, a co-expression network was constructed via the 1868 gene expression profiles.
Four hub mRNAs (CYCS, CASP3, NOD2, and CHMP4B) formed a classification model and concomitant results revealed the crucial role of pyroptosis in the periodontitis immune microenvironment, providing fresh insights into the etiopathogenesis of periodontitis and potential immunotherapy.
已发表的研究证明,细胞焦亡和牙周炎都与免疫有密切关系,最近的研究表明牙周炎与细胞焦亡之间存在着密切的相关性。虽然大量的研究结果证实细胞焦亡对肿瘤微环境有很强的影响,但细胞焦亡对牙周炎免疫微环境的影响作用仍知之甚少。因此,我们旨在确定细胞焦亡相关基因,其表达特征可以很好地区分牙周炎和健康对照,并了解细胞焦亡在牙周炎免疫微环境中的作用。
从基因表达综合数据库(GEO)中获取牙周炎相关数据集。进行了一系列的生物信息学分析,以研究细胞焦亡在牙周炎免疫微环境中的潜在机制。浸润免疫细胞、免疫反应基因集和人类白细胞抗原(HLA)基因都被视为牙周炎免疫微环境和细胞焦亡之间的潜在联系。
有 21 个细胞焦亡相关基因发生了失调。构建了一个由四个 mRNA 组成的联合分类模型,ROC 曲线分析表明其具有出色的分类能力。随后,通过实时定量 PCR(qRT-PCR)验证了这四个核心标志物(CYCS、CASP3、NOD2、CHMP4B)的 mRNA 水平。计算了每个核心基因与免疫特征之间的相关系数,结果显示 CASP3 与免疫特征的相关性最为显著。此外,还揭示了不同的细胞焦亡相关表达模式,并伴随着每种模式的免疫特征。之后,我们发现了 1868 个与细胞焦亡表型相关的基因,其中 134 个与免疫有关。根据功能富集分析,这些基因与免疫系统中的细胞因子信号和防御反应密切相关。最后,通过 1868 个基因表达谱构建了一个共表达网络。
四个核心 mRNA(CYCS、CASP3、NOD2 和 CHMP4B)形成了一个分类模型,结果揭示了细胞焦亡在牙周炎免疫微环境中的关键作用,为牙周炎的发病机制和潜在的免疫治疗提供了新的见解。