• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

构建一个六免疫相关长非编码 RNA 签名的生物信息学分析作为肝细胞癌的预后模型。

Bioinformatics Analysis for Constructing a Six-Immune-Related Long Noncoding RNA Signature as a Prognostic Model of Hepatocellular Carcinoma.

机构信息

Department of Hepatobiliary Surgery, The First Affiliated Hospital of Guangxi Medical University, Nanning, 530021 Guangxi Province, China.

出版信息

Biomed Res Int. 2022 Jul 7;2022:2093437. doi: 10.1155/2022/2093437. eCollection 2022.

DOI:10.1155/2022/2093437
PMID:35845962
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9283041/
Abstract

The present study was aimed at identifying the potential prognostic biomarkers of the immune-related long noncoding RNA (IRL) signature for patients with hepatocellular carcinoma (HCC). RNA-sequencing data and clinical information about HCC were obtained from The Cancer Genome Atlas. The IRLs were determined with regard to the coexpression of immune-related genes and differentially expressed lncRNAs. The survival IRLs were obtained using the univariate Cox analysis. Subsequently, the prognosis model was constructed via the multivariate Cox analysis. Subsequently, functional annotation was conducted using Gene Set Enrichment Analysis (GSEA) and principal component analysis (PCA). In total, 341 IRLs were identified, and 6 IRLs were found to have a highly significant association with the prognosis of patients with HCC. The immune prognosis model was constructed with these 6 IRLs (AC099850.4, negative regulator of antiviral response, AL031985.3, PRRT3-antisense RNA1, AL365203.2, and long intergenic nonprotein coding RNA 1224) using the multivariate Cox regression analysis. In addition, immune-related prognosis signatures were confirmed as an independent prognostic factor. The association between prognostic signatures and immune infiltration indicated that the 6 lncRNAs could reflect the immune status of the tumor. Collectively, the present study demonstrates that six-lncRNA signatures may be potential biomarkers to predict the prognosis of patients with HCC.

摘要

本研究旨在鉴定免疫相关长非编码 RNA (IRL) 特征对于肝细胞癌 (HCC) 患者的潜在预后生物标志物。从癌症基因组图谱中获得了 HCC 的 RNA 测序数据和临床信息。根据免疫相关基因的共表达和差异表达 lncRNA 确定了 IRL。使用单因素 Cox 分析获得生存 IRL。随后,通过多因素 Cox 分析构建预后模型。随后,使用基因集富集分析 (GSEA) 和主成分分析 (PCA) 进行功能注释。总共鉴定出 341 个 IRL,其中 6 个 IRL 与 HCC 患者的预后有高度显著相关性。使用多因素 Cox 回归分析构建了这些 6 个 IRL(AC099850.4、抗病毒反应负调节剂、AL031985.3、PRRT3-反义 RNA1、AL365203.2 和长非蛋白编码 RNA 1224)的免疫预后模型。此外,免疫相关预后特征被证实为独立的预后因素。预后特征与免疫浸润之间的关联表明,这 6 个 lncRNA 可以反映肿瘤的免疫状态。总的来说,本研究表明,六个 lncRNA 特征可能是预测 HCC 患者预后的潜在生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5282/9283041/3d80b4776f25/BMRI2022-2093437.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5282/9283041/3695a2f32fe8/BMRI2022-2093437.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5282/9283041/d259bc7fe0ff/BMRI2022-2093437.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5282/9283041/b7a49b66eb0c/BMRI2022-2093437.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5282/9283041/54d705adb1cf/BMRI2022-2093437.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5282/9283041/3d80b4776f25/BMRI2022-2093437.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5282/9283041/3695a2f32fe8/BMRI2022-2093437.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5282/9283041/d259bc7fe0ff/BMRI2022-2093437.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5282/9283041/b7a49b66eb0c/BMRI2022-2093437.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5282/9283041/54d705adb1cf/BMRI2022-2093437.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5282/9283041/3d80b4776f25/BMRI2022-2093437.005.jpg

相似文献

1
Bioinformatics Analysis for Constructing a Six-Immune-Related Long Noncoding RNA Signature as a Prognostic Model of Hepatocellular Carcinoma.构建一个六免疫相关长非编码 RNA 签名的生物信息学分析作为肝细胞癌的预后模型。
Biomed Res Int. 2022 Jul 7;2022:2093437. doi: 10.1155/2022/2093437. eCollection 2022.
2
Identification of a five-long non-coding RNA signature to improve the prognosis prediction for patients with hepatocellular carcinoma.鉴定五个长链非编码 RNA 标志物以改善肝细胞癌患者的预后预测。
World J Gastroenterol. 2018 Aug 14;24(30):3426-3439. doi: 10.3748/wjg.v24.i30.3426.
3
Identification of immune-related lncRNA signature for predicting immune checkpoint blockade and prognosis in hepatocellular carcinoma.鉴定免疫相关 lncRNA 特征,预测肝癌免疫检查点阻断和预后。
Int Immunopharmacol. 2021 Mar;92:107333. doi: 10.1016/j.intimp.2020.107333. Epub 2021 Jan 21.
4
Six-long non-coding RNA signature predicts recurrence-free survival in hepatocellular carcinoma.长链非编码 RNA 标志物预测肝细胞癌无复发生存率。
World J Gastroenterol. 2019 Jan 14;25(2):220-232. doi: 10.3748/wjg.v25.i2.220.
5
A prognostic signature based on the expression profile of the ferroptosis-related long non-coding RNAs in hepatocellular carcinoma.基于肝细胞癌中铁死亡相关长非编码 RNA 表达谱的预后签名。
Adv Clin Exp Med. 2022 Oct;31(10):1099-1109. doi: 10.17219/acem/149566.
6
Identification of Potential Prognostic Long Non-Coding RNA Biomarkers for Predicting Survival in Patients with Hepatocellular Carcinoma.用于预测肝细胞癌患者生存的潜在预后长链非编码RNA生物标志物的鉴定
Cell Physiol Biochem. 2018;48(5):1854-1869. doi: 10.1159/000492507. Epub 2018 Aug 9.
7
Prognostic Value of an Immune Long Non-Coding RNA Signature in Liver Hepatocellular Carcinoma.免疫长非编码 RNA 特征在肝肝细胞癌中的预后价值。
J Microbiol Biotechnol. 2024 Apr 28;34(4):958-968. doi: 10.4014/jmb.2308.08022. Epub 2024 Jan 30.
8
Identification of a novel prognostic signature for HCC and analysis of costimulatory molecule-related lncRNA AC099850.3.鉴定 HCC 的新型预后特征,并分析共刺激分子相关 lncRNA AC099850.3。
Sci Rep. 2022 Jun 15;12(1):9954. doi: 10.1038/s41598-022-13792-z.
9
Identification and characterization of a 25-lncRNA prognostic signature for early recurrence in hepatocellular carcinoma.鉴定和描述一个 25-lncRNA 预后标志物用于预测肝细胞癌早期复发。
BMC Cancer. 2021 Oct 30;21(1):1165. doi: 10.1186/s12885-021-08827-z.
10
A somatic mutation-derived LncRNA signatures of genomic instability predicts the prognosis and tumor microenvironment immune characters in hepatocellular carcinoma.一个源于体细胞突变的 LncRNA 基因组不稳定性特征可预测肝细胞癌的预后和肿瘤微环境免疫特征。
Hepatol Int. 2022 Oct;16(5):1220-1233. doi: 10.1007/s12072-022-10375-y. Epub 2022 Aug 10.

引用本文的文献

1
Long non-coding RNA-based single and combination independent prognostic biomarkers for hepatocellular carcinoma.基于长链非编码RNA的肝细胞癌单因素及联合独立预后生物标志物
Discov Oncol. 2025 Sep 2;16(1):1674. doi: 10.1007/s12672-025-03309-1.
2
Bioinformatic analysis indicated that STARD4-AS1 might be a novel ferroptosis-related biomarker of oral squamous cell carcinoma.生物信息学分析表明,STARD4-AS1可能是口腔鳞状细胞癌一种新的铁死亡相关生物标志物。
Heliyon. 2024 Jun 17;10(12):e33193. doi: 10.1016/j.heliyon.2024.e33193. eCollection 2024 Jun 30.

本文引用的文献

1
Long Noncoding RNA NRAV Promotes Respiratory Syncytial Virus Replication by Targeting the MicroRNA miR-509-3p/Rab5c Axis To Regulate Vesicle Transportation.长非编码 RNA NRAV 通过靶向 microRNA miR-509-3p/Rab5c 轴调节囊泡运输促进呼吸道合胞病毒复制。
J Virol. 2020 May 4;94(10). doi: 10.1128/JVI.00113-20.
2
Long non-coding RNA PRRT3-AS1 silencing inhibits prostate cancer cell proliferation and promotes apoptosis and autophagy.长链非编码 RNA PRRT3-AS1 沉默抑制前列腺癌细胞增殖并促进细胞凋亡和自噬。
Exp Physiol. 2020 May;105(5):793-808. doi: 10.1113/EP088011. Epub 2020 Apr 22.
3
Silencing Long Non-coding RNA LINC01224 Inhibits Hepatocellular Carcinoma Progression via MicroRNA-330-5p-Induced Inhibition of CHEK1.
沉默长链非编码RNA LINC01224通过微小RNA-330-5p诱导的CHEK1抑制作用抑制肝细胞癌进展。
Mol Ther Nucleic Acids. 2020 Mar 6;19:482-497. doi: 10.1016/j.omtn.2019.10.007. Epub 2019 Oct 17.
4
7-lncRNA Assessment Model for Monitoring and Prognosis of Breast Cancer Patients: Based on Cox Regression and Co-expression Analysis.用于监测和预测乳腺癌患者的7lncRNA评估模型:基于Cox回归和共表达分析
Front Oncol. 2019 Dec 3;9:1348. doi: 10.3389/fonc.2019.01348. eCollection 2019.
5
Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci.全基因组 PhyloCSF 发现高可信度的人类蛋白编码基因和外显子,有助于阐明 118 个 GWAS 基因座。
Genome Res. 2019 Dec;29(12):2073-2087. doi: 10.1101/gr.246462.118. Epub 2019 Sep 19.
6
From bench to bed: the tumor immune microenvironment and current immunotherapeutic strategies for hepatocellular carcinoma.从基础到临床:肝癌的肿瘤免疫微环境和当前免疫治疗策略。
J Exp Clin Cancer Res. 2019 Sep 9;38(1):396. doi: 10.1186/s13046-019-1396-4.
7
The lncRNA UCA1 promotes proliferation, migration, immune escape and inhibits apoptosis in gastric cancer by sponging anti-tumor miRNAs.长链非编码 RNA UCA1 通过海绵吸附抗肿瘤 miRNAs 促进胃癌增殖、迁移、免疫逃避并抑制细胞凋亡。
Mol Cancer. 2019 Jul 4;18(1):115. doi: 10.1186/s12943-019-1032-0.
8
Intratumoral plasmacytoid dendritic cells as a poor prognostic factor for hepatocellular carcinoma following curative resection.肿瘤内浆细胞样树突状细胞是影响根治性切除术后肝细胞癌预后的不良因素。
Cancer Immunol Immunother. 2019 Aug;68(8):1223-1233. doi: 10.1007/s00262-019-02355-3. Epub 2019 Jun 14.
9
β-Catenin Activation Promotes Immune Escape and Resistance to Anti-PD-1 Therapy in Hepatocellular Carcinoma.β-连环蛋白激活促进肝癌的免疫逃逸和抗 PD-1 治疗耐药性。
Cancer Discov. 2019 Aug;9(8):1124-1141. doi: 10.1158/2159-8290.CD-19-0074. Epub 2019 Jun 11.
10
Targeting monocyte-intrinsic enhancer reprogramming improves immunotherapy efficacy in hepatocellular carcinoma.靶向单核细胞内增强子重编程提高肝癌免疫治疗疗效。
Gut. 2020 Feb;69(2):365-379. doi: 10.1136/gutjnl-2018-317257. Epub 2019 May 10.