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构建一个六免疫相关长非编码 RNA 签名的生物信息学分析作为肝细胞癌的预后模型。

Bioinformatics Analysis for Constructing a Six-Immune-Related Long Noncoding RNA Signature as a Prognostic Model of Hepatocellular Carcinoma.

机构信息

Department of Hepatobiliary Surgery, The First Affiliated Hospital of Guangxi Medical University, Nanning, 530021 Guangxi Province, China.

出版信息

Biomed Res Int. 2022 Jul 7;2022:2093437. doi: 10.1155/2022/2093437. eCollection 2022.

Abstract

The present study was aimed at identifying the potential prognostic biomarkers of the immune-related long noncoding RNA (IRL) signature for patients with hepatocellular carcinoma (HCC). RNA-sequencing data and clinical information about HCC were obtained from The Cancer Genome Atlas. The IRLs were determined with regard to the coexpression of immune-related genes and differentially expressed lncRNAs. The survival IRLs were obtained using the univariate Cox analysis. Subsequently, the prognosis model was constructed via the multivariate Cox analysis. Subsequently, functional annotation was conducted using Gene Set Enrichment Analysis (GSEA) and principal component analysis (PCA). In total, 341 IRLs were identified, and 6 IRLs were found to have a highly significant association with the prognosis of patients with HCC. The immune prognosis model was constructed with these 6 IRLs (AC099850.4, negative regulator of antiviral response, AL031985.3, PRRT3-antisense RNA1, AL365203.2, and long intergenic nonprotein coding RNA 1224) using the multivariate Cox regression analysis. In addition, immune-related prognosis signatures were confirmed as an independent prognostic factor. The association between prognostic signatures and immune infiltration indicated that the 6 lncRNAs could reflect the immune status of the tumor. Collectively, the present study demonstrates that six-lncRNA signatures may be potential biomarkers to predict the prognosis of patients with HCC.

摘要

本研究旨在鉴定免疫相关长非编码 RNA (IRL) 特征对于肝细胞癌 (HCC) 患者的潜在预后生物标志物。从癌症基因组图谱中获得了 HCC 的 RNA 测序数据和临床信息。根据免疫相关基因的共表达和差异表达 lncRNA 确定了 IRL。使用单因素 Cox 分析获得生存 IRL。随后,通过多因素 Cox 分析构建预后模型。随后,使用基因集富集分析 (GSEA) 和主成分分析 (PCA) 进行功能注释。总共鉴定出 341 个 IRL,其中 6 个 IRL 与 HCC 患者的预后有高度显著相关性。使用多因素 Cox 回归分析构建了这些 6 个 IRL(AC099850.4、抗病毒反应负调节剂、AL031985.3、PRRT3-反义 RNA1、AL365203.2 和长非蛋白编码 RNA 1224)的免疫预后模型。此外,免疫相关预后特征被证实为独立的预后因素。预后特征与免疫浸润之间的关联表明,这 6 个 lncRNA 可以反映肿瘤的免疫状态。总的来说,本研究表明,六个 lncRNA 特征可能是预测 HCC 患者预后的潜在生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5282/9283041/3695a2f32fe8/BMRI2022-2093437.001.jpg

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