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评估氯化锂作为从冷冻静脉段中分离 RNA 的沉淀剂的优势。

Evaluation of Advantages of Lithium Chloride as a Precipitating Agent in RNA Isolation from Frozen Vein Segments.

机构信息

Institute of Chemical Biology and Fundamental Medicine, Siberian Division of the Russian Academy of Sciences, Novosibirsk, Russia.

Novosibirsk National Research State University, Novosibirsk, Russia.

出版信息

Bull Exp Biol Med. 2022 Jul;173(3):384-389. doi: 10.1007/s10517-022-05554-8. Epub 2022 Jul 19.

DOI:10.1007/s10517-022-05554-8
PMID:35852690
Abstract

Contamination of the sample with DNA is a problem when isolating RNA by phenol-chloroform extraction, and DNase treatment introduces an additional error in the analysis of gene expression. Bearing in mind the ability of LiCl to precipitate RNA selectively, we studied the possibility and advantage of using LiCl as a precipitation agent in the protocol for RNA precipitation [3] from frozen segments of large vessels. Combined use of LiCl with isopropanol as precipitating agents (optimal ratio 2.5 M and 40%, respectively) significantly eliminates negative effects of using this salt (inhibition of reverse transcription and low RNA yield).

摘要

用苯酚-氯仿抽提法分离 RNA 时,样本受到 DNA 污染是一个问题,而 DNase 处理会在基因表达分析中引入额外的误差。考虑到 LiCl 沉淀 RNA 的选择性,我们研究了在从大型血管冷冻切片中沉淀 RNA 的方案[3]中使用 LiCl 作为沉淀剂的可能性和优势。将 LiCl 与异丙醇联合使用作为沉淀剂(最佳比例分别为 2.5 M 和 40%)可显著消除使用该盐(抑制反转录和低 RNA 产量)的负面影响。

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Bull Exp Biol Med. 2022 Jul;173(3):384-389. doi: 10.1007/s10517-022-05554-8. Epub 2022 Jul 19.
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Construction of prokaryotic strand-specific primary-transcripts saturated RNASeq library by controlled heat magnesium-dependent mRNA degradation.通过控制热镁依赖性 mRNA 降解构建原核链特异性初级转录物饱和 RNASeq 文库。
Biochimie. 2020 Oct;177:63-67. doi: 10.1016/j.biochi.2020.08.001. Epub 2020 Aug 14.
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DNA methylation and gene expression profiling reveal MFAP5 as a regulatory driver of extracellular matrix remodeling in varicose vein disease.DNA 甲基化和基因表达谱分析显示 MFAP5 是静脉疾病中细胞外基质重塑的调节驱动因子。
Epigenomics. 2018 Aug;10(8):1103-1119. doi: 10.2217/epi-2018-0001. Epub 2018 Aug 2.
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RNA Purity, Real-Time PCR Sensitivity, and Colon Segment Influence mRNA Relative Expression in Murine Dextran Sodium Sulfate Experimental Colitis.
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Commun Agric Appl Biol Sci. 2010;75(4):777-81.
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An optimized preparation method to obtain high-quality RNA from dry sunflower seeds.一种从干燥向日葵种子中获取高质量RNA的优化制备方法。
Genet Mol Res. 2011 Feb 1;10(1):160-8. doi: 10.4238/vol10-1gmr979.
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