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小脑基因数据库:一个对小脑发育至关重要的基因的集合数据库。

The Cerebellar Gene Database: a Collective Database of Genes Critical for Cerebellar Development.

机构信息

Centre for Molecular Medicine and Therapeutics, BC Children's Hospital Research Institute, 950 W 28th Ave, Vancouver, BC, V6H 3V5, Canada.

University of British Columbia, Vancouver, BC, V6T 1Z4, Canada.

出版信息

Cerebellum. 2022 Aug;21(4):606-614. doi: 10.1007/s12311-022-01445-w. Epub 2022 Jul 20.

Abstract

This report presents the first comprehensive database that specifically compiles genes critical for cerebellar development and function. The Cerebellar Gene Database details genes that, when perturbed in mouse models, result in a cerebellar phenotype according to available data from both Mouse Genome Informatics and PubMed, as well as references to the corresponding studies for further examination. This database also offers a compilation of human genetic disorders with a cerebellar phenotype and their associated gene information from the Online Mendelian Inheritance in Man (OMIM) database. By comparing and contrasting the mouse and human datasets, we observe that only a small proportion of human mutant genes with a cerebellar phenotype have been studied in mouse knockout models. Given the highly conserved nature between mouse and human genomes, this surprising finding highlights how mouse genetic models can be more frequently employed to elucidate human disease etiology. On the other hand, many mouse genes identified in the present study that are known to lead to a cerebellar phenotype when perturbed have not yet been found to be pathogenic in the cerebellum of humans. This database furthers our understanding of human cerebellar disorders with yet-to-be-identified genetic causes. It is our hope that this gene database will serve as an invaluable tool for gathering background information, generating hypotheses, and facilitating translational research endeavors. Moreover, we encourage continual inputs from the research community in making this compilation a living database, one that remains up-to-date with the advances in cerebellar research.

摘要

本报告介绍了第一个专门汇编小脑发育和功能关键基因的综合数据库。小脑基因数据库详细介绍了根据 Mouse Genome Informatics 和 PubMed 中的现有数据以及相应研究的参考文献,在小鼠模型中受到干扰后会导致小脑表型的基因。该数据库还提供了来自在线孟德尔遗传数据库(OMIM)的具有小脑表型的人类遗传疾病及其相关基因信息的汇编。通过比较小鼠和人类数据集,我们观察到,在具有小脑表型的人类突变基因中,只有一小部分已在小鼠敲除模型中进行了研究。鉴于小鼠和人类基因组之间高度保守的性质,这一令人惊讶的发现突出表明,小鼠遗传模型可以更频繁地用于阐明人类疾病的病因。另一方面,在本研究中确定的许多在受到干扰时已知会导致小脑表型的小鼠基因尚未在人类小脑被发现为致病性。该数据库进一步加深了我们对具有尚未确定遗传原因的人类小脑疾病的理解。我们希望这个基因数据库将成为收集背景信息、提出假设和促进转化研究工作的宝贵工具。此外,我们鼓励研究界不断提供投入,使这个汇编成为一个具有生命力的数据库,始终与小脑研究的进展保持同步。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0ba0/9325837/adce07f12418/12311_2022_1445_Fig1_HTML.jpg

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