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延胡索酸盐感应 DcuS-DcuR 双组分系统在膜上的紧密复合形成以及游离 DcuR 扩散对靶启动子的搜索。

Tight Complex Formation of the Fumarate Sensing DcuS-DcuR Two-Component System at the Membrane and Target Promoter Search by Free DcuR Diffusion.

机构信息

Institute for Molecular Physiology; Microbiology and Biotechnology, Johannes Gutenberg-University, Mainz, Germany.

Department of Chemistry, and Centre for Synthetic Microbiology, SYNMIKRO, Philipps-University Marburg, Marburg.

出版信息

mSphere. 2022 Aug 31;7(4):e0023522. doi: 10.1128/msphere.00235-22. Epub 2022 Jul 7.

Abstract

Signaling of two-component systems by phosphoryl transfer requires interaction of the sensor kinase with the response regulator. Interaction of the C4-dicarboxylate-responsive and membrane-integral sensor kinase DcuS with the response regulator DcuR was studied. , the cytoplasmic part of DcuS (PAS-Kin) was employed. Stable complexes were formed, when either DcuS or DcuR were phosphorylated ( 22 ± 11 and 28 ± 7 nM, respectively). The unphosphorylated proteins produced a more labile complex ( 1380 ± 395 nM). Bacterial two-hybrid studies confirm interaction of DcuR with DcuS (and PAS-Kin) . The absolute contents of DcuR (197-979 pmol mg protein) in the bacteria exceeded those of DcuS by more than 1 order of magnitude. According to the values, DcuS exists in complex, with phosphorylated but also unphosphorylated DcuR. In live cell imaging, the predominantly freely diffusing DcuR becomes markedly less mobile after phosphorylation and activation of DcuS by fumarate. Portions of the low mobility fraction accumulated at the cell poles, the preferred location of DcuS, and other portions within the cell, representing phosphorylated DcuR bound to promoters. In the model, acitvation of DcuS increases the affinity toward DcuR, leading to DcuS-P × DcuR formation and phosphorylation of DcuR. The complex is stable enough for phosphate-transfer, but labile enough to allow exchange between DcuR from the cytosol and DcuR-P of the complex. Released DcuR-P diffuses to target promoters and binds. Uncomplexed DcuR-P in the cytosol binds to nonactivated DcuS and becomes dephosphorylated. The lower affinity between DcuR and DcuS avoids blocking of DcuS and allows rapid exchange of DcuR. Complex formation of membrane-bound sensor kinases with the response regulators represents an inherent step of signaling from the membrane to the promoters on the DNA. In the C4-dicarboxylate-sensing DcuS-DcuR two-component system, complex formation is strengthened by activation (phosphorylation) and , with trapping of the response regulator DcuR at the membrane. Single-molecule tracking of DcuR in the bacterial cell demonstrates two populations of DcuR with decreased mobility in the bacteria after activation: one at the membrane, but a second in the cytosol, likely representing DNA-bound DcuR. The data suggest a model with binding of DcuR to DcuS-P for phosphorylation, and of DcuR-P to DcuS for dephosphorylation, allowing rapid adaptation of the DcuR phosphorylation state. DcuR-P is released and transferred to DNA by 3D diffusion.

摘要

双组分系统的信号转导需要传感器激酶与反应调节剂相互作用。研究了 C4-二羧酸响应和膜整合传感器激酶 DcuS 与反应调节剂 DcuR 的相互作用。使用了 DcuS 的细胞质部分(PAS-Kin)。当 DcuS 或 DcuR 被磷酸化时,形成稳定的复合物(分别为 22±11 和 28±7 nM)。未磷酸化的蛋白质产生更不稳定的复合物(1380±395 nM)。细菌双杂交研究证实了 DcuR 与 DcuS(和 PAS-Kin)的相互作用。细菌中 DcuR 的绝对含量(197-979 pmol mg 蛋白)超过 DcuS 超过 1 个数量级。根据 Kd 值,DcuS 以复合物的形式存在,与磷酸化和非磷酸化的 DcuR 结合。在活细胞成像中,富马酸激活 DcuS 后,DcuR 主要以自由扩散的方式变得明显移动性降低。低迁移率部分的一部分在细胞极积累,这是 DcuS 的首选位置,而另一部分在细胞内,代表与启动子结合的磷酸化 DcuR。在该模型中,DcuS 的激活增加了与 DcuR 的亲和力,导致 DcuS-P×DcuR 的形成和 DcuR 的磷酸化。该复合物足够稳定以进行磷酸转移,但足够不稳定以允许细胞质中的 DcuR 与复合物中的 DcuR-P 之间交换。释放的 DcuR-P 扩散到靶启动子并结合。细胞质中未复合的 DcuR-P 与非激活的 DcuS 结合并去磷酸化。DcuR 和 DcuS 之间的低亲和力避免了 DcuS 的阻断,并允许 DcuR 的快速交换。膜结合传感器激酶与反应调节剂的复合物形成是信号从膜传递到 DNA 上启动子的固有步骤。在 C4-二羧酸感应 DcuS-DcuR 双组分系统中,通过激活(磷酸化)和,复合物形成得到增强,同时将反应调节剂 DcuR 捕获在膜上。在细菌细胞中单分子跟踪 DcuR 表明,激活后细菌中 DcuR 的迁移率降低,有两种 DcuR 群体:一种在膜上,另一种在细胞质中,可能代表与 DNA 结合的 DcuR。该数据表明了一种模型,其中 DcuR 与 DcuS-P 结合进行磷酸化,DcuR-P 与 DcuS 结合进行去磷酸化,从而允许 DcuR 磷酸化状态的快速适应。DcuR-P 通过 3D 扩散释放并转移到 DNA 上。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2508/9429925/dc5a14010e6d/msphere.00235-22-f001.jpg

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