Department of Biotechnology, School of Bio and Chemical Engineering, Kalasalingam Academy of Research and Education, Krishnankoil 626126, India.
Department of Hydrobiology, Faculty of Biology, University of Warsaw, 02-089 Warsaw, Poland.
Biomolecules. 2022 Jun 25;12(7):887. doi: 10.3390/biom12070887.
is an opportunistic pathogen that can cause acute and severe infections. Increasing resistance to antibiotics has given rise to the urgent need for an alternative antimicrobial agent. A promising strategy is the inhibition of iron sequestration in the bacteria. The current work aimed to screen for inhibitors of pyoverdine-mediated iron sequestration in . As a drug target, we choose l-ornithine-N5-monooxygenase (PvdA), an enzyme involved in the biosynthesis of pyoverdine that catalyzes the FAD-dependent hydroxylation of the side chain amine of ornithine. As drug repurposing is a fast and cost-efficient way of discovering new applications for known drugs, the approach may help to solve emerging clinical problems. In this study, we use data about molecules from drug banks for screening. A total of 15 drugs that are similar in structure to l-ornithine, the substrate of PvdA, and 30 drugs that are sub-structures of l-ornithine were virtually docked against PvdA. N-2-succinyl ornithine and cilazapril were found to be the top binders with a binding energy of -12.8 and -9.1 kcal mol, respectively. As the drug-likeness and ADME properties of the drugs were also found to be promising, molecular dynamics studies were performed to further confirm the stability of the complexes. The results of this in silico study indicate that N-2-succinyl ornithine could potentially be explored as a drug for the treatment of infections.
是一种机会性病原体,可导致急性和严重感染。抗生素耐药性的增加使得人们迫切需要一种替代的抗菌剂。一种有前途的策略是抑制细菌中铁的螯合。目前的工作旨在筛选抑制 中吡咯并喹啉啉介导的铁螯合的抑制剂。作为药物靶点,我们选择 l-鸟氨酸 N5-单加氧酶(PvdA),该酶参与吡咯并喹啉啉的生物合成,催化 FAD 依赖性鸟氨酸侧链胺的羟化。由于药物再利用是发现已知药物新用途的快速且具有成本效益的方法,因此该方法可能有助于解决新出现的临床问题。在这项研究中,我们使用药物库中的分子数据进行筛选。总共虚拟对接了 15 种与 PvdA 的底物 l-鸟氨酸结构相似的药物和 30 种 l-鸟氨酸的亚结构药物。N-2-琥珀酰鸟氨酸和西拉普利被发现是结合能分别为-12.8 和-9.1 kcal mol 的最佳结合物。由于还发现这些药物具有良好的药物相似性和 ADME 特性,因此进行了分子动力学研究以进一步确认复合物的稳定性。这项计算机研究的结果表明,N-2-琥珀酰鸟氨酸可能有潜力被探索为治疗 感染的药物。