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对ASK1调节因子进行晶体学挖掘,以揭示复杂的蛋白质-蛋白质相互作用界面,从而发现小分子。

Crystallographic mining of ASK1 regulators to unravel the intricate PPI interfaces for the discovery of small molecule.

作者信息

Agrahari Ashish Kumar, Dikshit Madhu, Asthana Shailendra

机构信息

Translational Health Science and Technology Institute (THSTI), Faridabad, Haryana, India.

出版信息

Comput Struct Biotechnol J. 2022 Jul 11;20:3734-3754. doi: 10.1016/j.csbj.2022.07.008. eCollection 2022.

Abstract

Protein seldom performs biological activities in isolation. Understanding the protein-protein interactions' physical rewiring in response to pathological conditions or pathogen infection can help advance our comprehension of disease etiology, progression, and pathogenesis, which allow us to explore the alternate route to control the regulation of key target interactions, timely and effectively. Nonalcoholic steatohepatitis (NASH) is now a global public health problem exacerbated due to the lack of appropriate treatments. The most advanced anti-NASH lead compound (selonsertib) is withdrawn, though it is able to inhibit its target Apoptosis signal-regulating kinase 1 (ASK1) completely, indicating the necessity to explore alternate routes rather than complete inhibition. Understanding the interaction fingerprints of endogenous regulators at the molecular level that underpin disease formation and progression may spur the rationale of designing therapeutic strategies. Based on our analysis and thorough literature survey of the various key regulators and PTMs, the current review emphasizes PPI-based drug discovery's relevance for NASH conditions. The lack of structural detail (interface sites) of ASK1 and its regulators makes it challenging to characterize the PPI interfaces. This review summarizes key regulators interaction fingerprinting of ASK1, which can be explored further to restore the homeostasis from its hyperactive states for therapeutics intervention against NASH.

摘要

蛋白质很少单独发挥生物学活性。了解蛋白质-蛋白质相互作用在病理条件或病原体感染下的物理重排,有助于加深我们对疾病病因、进展和发病机制的理解,从而使我们能够探索控制关键靶标相互作用调控的替代途径,及时且有效地进行干预。非酒精性脂肪性肝炎(NASH)目前是一个全球性的公共卫生问题,由于缺乏适当的治疗方法而愈发严重。最先进的抗NASH先导化合物(司美格鲁肽)已被撤回,尽管它能够完全抑制其靶标凋亡信号调节激酶1(ASK1),这表明有必要探索替代途径而非完全抑制。在分子水平上理解支撑疾病形成和进展的内源性调节因子的相互作用指纹,可能会激发设计治疗策略的基本原理。基于我们对各种关键调节因子和翻译后修饰的分析以及全面的文献调研,本综述强调基于蛋白质-蛋白质相互作用的药物发现对NASH病症的相关性。ASK1及其调节因子缺乏结构细节(界面位点),使得表征蛋白质-蛋白质相互作用界面具有挑战性。本综述总结了ASK1的关键调节因子相互作用指纹,可进一步探索以使其从过度活跃状态恢复稳态,从而针对NASH进行治疗干预。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9a0f/9294202/efe013274538/ga1.jpg

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