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胃癌患者免疫相关分子亚型的特征及与免疫治疗反应相关的预后标志物。

Characterization of Immune-Related Molecular Subtypes and a Prognostic Signature Correlating With the Response to Immunotherapy in Patients With Gastric Cancer.

机构信息

Department of Hepatopancreatobiliary Surgery, Shanghai East Hospital, School of Medicine, Tongji University, Shanghai, China.

Department of Ophthalmology, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.

出版信息

Front Immunol. 2022 Jul 8;13:939836. doi: 10.3389/fimmu.2022.939836. eCollection 2022.

Abstract

Gastric cancer (GC) is a disease characterized by high molecular and phenotypic heterogeneity and represents a leading cause of cancer-related death worldwide. The tumor immune microenvironment (TIME) affects the response to immunotherapy and the prognosis of patients with GC. Explorations of the TIME in GC and characterization of molecular subtypes might enhance personalized treatment and facilitate clinical decision-making. In this study, two molecular subtypes were defined through unsupervised consensus clustering based on immune-related dysregulated genes. Then, patients with different molecular subtypes of GC were shown to have distinct differences in sensitivity to immune checkpoint blockers (ICBs). The immune-related prognostic signature was established utilizing least absolute shrinkage and selection operator (LASSO)-Cox regression analysis. Three independent external cohorts and the IMvigor210 cohort were introduced to validate the robustness of IPRS. scRNA-seq data of GC samples were used to decipher the underlying mechanisms of how IPRS contributes to the TIME. GC biospecimens were collected for RT-qPCR to further validate our findings. In summary, we characterized the abnormal TIME of GC and constructed a reliable immune-related prognostic signature correlating with the response to immunotherapy. This study may provide new strategies for developing individualized treatments for patients with GC.

摘要

胃癌(GC)是一种具有高度分子和表型异质性的疾病,是全球癌症相关死亡的主要原因。肿瘤免疫微环境(TIME)影响免疫治疗的反应和 GC 患者的预后。对 GC 中的 TIME 进行探索并对分子亚型进行特征描述,可能会增强个性化治疗并有助于临床决策。在这项研究中,通过基于免疫相关失调基因的无监督共识聚类定义了两种分子亚型。然后,不同分子亚型的 GC 患者对免疫检查点抑制剂(ICB)的敏感性存在明显差异。利用最小绝对收缩和选择算子(LASSO)-Cox 回归分析建立了免疫相关预后签名。三个独立的外部队列和 IMvigor210 队列被引入以验证 IPRS 的稳健性。使用 GC 样本的 scRNA-seq 数据来破译 IPRS 如何影响 TIME 的潜在机制。收集 GC 生物样本进行 RT-qPCR 进一步验证了我们的发现。总之,我们描述了 GC 的异常 TIME,并构建了一个与免疫治疗反应相关的可靠免疫相关预后签名。这项研究可能为 GC 患者的个体化治疗提供新策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/052e/9309259/bb8bbaa4bdfe/fimmu-13-939836-g001.jpg

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