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组成型异染色质的传播有助于X染色体失活。

Constitutive heterochromatin propagation contributes to the X chromosome inactivation.

作者信息

Shevchenko Alexander I, Rifel Nikita A, Zakian Suren M, Zakharova Irina S

机构信息

Federal Research Center, "Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences", Novosibirsk, 630090, Russia.

Institute of Chemical Biology and Fundamental Medicine of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, 630090, Russia.

出版信息

Chromosome Res. 2022 Dec;30(4):289-307. doi: 10.1007/s10577-022-09706-4. Epub 2022 Aug 3.


DOI:10.1007/s10577-022-09706-4
PMID:35920963
Abstract

Imprinted X chromosome inactivation (iXCI) balances the expression of X-linked genes in preimplantation embryos and extraembryonic tissues in rodents. Long noncoding Xist RNA drives iXCI, silencing genes and recruiting Xist-dependent chromatin repressors. Some domains on the inactive X chromosome include repressive modifications specific to constitutive heterochromatin, which show no direct link to Xist RNA. We explored the relationship between Xist RNA and chromatin silencing during iXCI in vole Microtus levis. We performed locus-specific activation of Xist transcription on the only active X chromosome using the dCas9-SAM system in XO vole trophoblast stem cells (TSCs), which allow modeling iXCI events to some extent. The artificially activated endogenous vole Xist transcript is truncated and restricted ~ 6.6 kb of the exon 1. Ectopic Xist RNA accumulates on the X chromosome and recruits Xist-dependent modifications during TSC differentiation, yet is incapable by itself repressing X-linked genes. Transcriptional silencing occurs upon ectopic Xist upregulation only when repressive marks spread from the massive telomeric constitutive heterochromatin to the X chromosome region containing genes. We hypothesize that the Xist RNA-induced propagation of repressive marks from the constitutive heterochromatin could be a mechanism involved in X chromosome inactivation.

摘要

印记X染色体失活(iXCI)可平衡啮齿动物植入前胚胎和胚外组织中X连锁基因的表达。长链非编码Xist RNA驱动iXCI,使基因沉默并招募Xist依赖性染色质抑制因子。失活X染色体上的一些区域包括组成型异染色质特有的抑制性修饰,这些修饰与Xist RNA没有直接联系。我们研究了草原田鼠iXCI过程中Xist RNA与染色质沉默之间的关系。我们在XO草原田鼠滋养层干细胞(TSCs)中使用dCas9-SAM系统对唯一的活性X染色体进行Xist转录的位点特异性激活,这在一定程度上允许对iXCI事件进行建模。人工激活的内源性草原田鼠Xist转录本被截断,局限于外显子1的约6.6 kb区域。异位Xist RNA在X染色体上积累,并在TSC分化过程中招募Xist依赖性修饰,但它本身无法抑制X连锁基因。只有当抑制性标记从大量端粒组成型异染色质扩散到包含基因的X染色体区域时,异位Xist上调才会导致转录沉默。我们假设Xist RNA诱导的抑制性标记从组成型异染色质的传播可能是参与X染色体失活的一种机制。

相似文献

[1]
Constitutive heterochromatin propagation contributes to the X chromosome inactivation.

Chromosome Res. 2022-12

[2]
Impact of Xist RNA on chromatin modifications and transcriptional silencing maintenance at different stages of imprinted X chromosome inactivation in vole Microtus levis.

Chromosoma. 2018-3

[3]
Mosaic heterochromatin of the inactive X chromosome in vole Microtus rossiaemeridionalis.

Mamm Genome. 2009-7-23

[4]
Dynamics of the two heterochromatin types during imprinted X chromosome inactivation in vole Microtus levis.

PLoS One. 2014-2-4

[5]
Evolution from XIST-independent to XIST-controlled X-chromosome inactivation: epigenetic modifications in distantly related mammals.

PLoS One. 2011-4-25

[6]
How does the Xist activator Rlim/Rnf12 regulate Xist expression?

Biochem Soc Trans. 2024-6-26

[7]
Loss of Xist RNA from the inactive X during B cell development is restored in a dynamic YY1-dependent two-step process in activated B cells.

PLoS Genet. 2017-10-9

[8]
What makes the maternal X chromosome resistant to undergoing imprinted X inactivation?

Philos Trans R Soc Lond B Biol Sci. 2017-11-5

[9]
Deletion of the XIST promoter from the human inactive X chromosome compromises polycomb heterochromatin maintenance.

Chromosoma. 2021-9

[10]
Uncoupling of X-linked gene silencing from XIST binding by DICER1 and chromatin modulation on human inactive X chromosome.

Chromosoma. 2015-6

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