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揭示拟南芥生物钟的表观基因组:组蛋白乙酰化和去乙酰化的动态变化。

Illuminating the Arabidopsis circadian epigenome: Dynamics of histone acetylation and deacetylation.

机构信息

Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra, 08193, Barcelona, Spain.

Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra, 08193, Barcelona, Spain; Consejo Superior de Investigaciones Científicas (CSIC), 08028, Barcelona, Spain.

出版信息

Curr Opin Plant Biol. 2022 Oct;69:102268. doi: 10.1016/j.pbi.2022.102268. Epub 2022 Jul 31.

Abstract

The circadian clock generates rhythms in biological processes including plant development and metabolism. Light synchronizes the circadian clock with the day and night cycle and also triggers developmental transitions such as germination, or flowering. The circadian and light signaling pathways are closely interconnected and understanding their mechanisms of action and regulation requires the integration of both pathways in their complexity. Here, we provide a glimpse into how chromatin remodeling lies at the interface of the circadian and light signaling regulation. We focus on histone acetylation/deacetylation and the generation of permissive or repressive states for transcription. Several chromatin remodelers intervene in both pathways, suggesting that interaction with specific transcription factors might specify the proper timing or light-dependent responses. Deciphering the repertoire of chromatin remodelers and their interacting transcription factors will provide a view on the circadian and light-dependent epigenetic landscape amenable for mechanistic studies and timely regulation of transcription in plants.

摘要

生物钟在包括植物发育和代谢在内的生物过程中产生节律。光使生物钟与昼夜周期同步,并触发发育转变,如发芽或开花。生物钟和光信号通路密切相关,要理解它们的作用机制和调控,需要将这两个通路整合到其复杂性中。在这里,我们提供了一个视角,了解染色质重塑如何处于生物钟和光信号调节的界面。我们专注于组蛋白乙酰化/去乙酰化以及转录的许可或抑制状态的产生。几种染色质重塑因子干预这两个通路,这表明与特定转录因子的相互作用可能指定适当的时间或依赖光的反应。解析染色质重塑因子及其相互作用的转录因子的 repertoire 将提供一个关于生物钟和光依赖性表观遗传景观的视图,该景观适用于机制研究和植物中转录的及时调控。

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