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盐诱导的无序蛋白质构象集合体的转变。

Salt-Induced Transitions in the Conformational Ensembles of Intrinsically Disordered Proteins.

机构信息

Solid State and Structural Chemistry Unit, Indian Institute of Science, Bengaluru, Karnataka, India 560012.

出版信息

J Phys Chem B. 2022 Aug 18;126(32):5959-5971. doi: 10.1021/acs.jpcb.2c03476. Epub 2022 Aug 9.

Abstract

Salts modulate the behavior of intrinsically disordered proteins (IDPs) and influence the formation of membraneless organelles through liquid-liquid phase separation (LLPS). In low ionic strength solutions, IDP conformations are perturbed by the screening of electrostatic interactions, independent of the salt identity. In this regime, insight into the IDP behavior can be obtained using the theory for salt-induced transitions in charged polymers. However, salt-specific interactions with the charged and uncharged residues, known as the Hofmeister effect, influence IDP behavior in high ionic strength solutions. There is a lack of reliable theoretical models in high salt concentration regimes to predict the salt effect on IDPs. We propose a simulation methodology using a coarse-grained IDP model and experimentally measured water to salt solution transfer free energies of various chemical groups that allowed us to study the salt-specific transitions induced in the IDPs conformational ensemble. We probed the effect of three different monovalent salts on five IDPs belonging to various polymer classes based on charged residue content. We demonstrate that all of the IDPs of different polymer classes behave as self-avoiding walks (SAWs) at physiological salt concentration. In high salt concentrations, the transitions observed in the IDP conformational ensembles are dependent on the salt used and the IDP sequence and composition. Changing the anion with the cation fixed can result in the IDP transition from a SAW-like behavior to a collapsed globule. An important implication of these results is that a suitable salt can be identified to induce condensation of an IDP through LLPS.

摘要

盐调节无规卷曲蛋白质(IDP)的行为,并通过液-液相分离(LLPS)影响无膜细胞器的形成。在低离子强度溶液中,IDP 构象受到静电相互作用屏蔽的干扰,而与盐的种类无关。在这种情况下,可以使用带电聚合物盐诱导转变理论来了解 IDP 的行为。然而,与带电和不带电残基的盐特异性相互作用,即豪夫迈斯特效应,会影响高离子强度溶液中 IDP 的行为。在高盐浓度下,缺乏可靠的理论模型来预测盐对 IDP 的影响。我们提出了一种使用粗粒化 IDP 模型和实验测量的各种化学基团的水到盐溶液转移自由能的模拟方法,该方法允许我们研究 IDP 构象系综中诱导的盐特异性转变。我们研究了三种不同单价盐对五种属于不同聚合物类别的 IDP 的影响,这些 IDP 基于带电残基含量。我们证明,所有不同聚合物类别的 IDP 在生理盐浓度下都表现为无规行走(SAWs)。在高盐浓度下,在 IDP 构象系综中观察到的转变取决于所使用的盐和 IDP 序列和组成。将阳离子固定而改变阴离子可以导致 IDP 从类似于 SAW 的行为转变为塌陷的球蛋白。这些结果的一个重要含义是,可以识别出合适的盐通过 LLPS 诱导 IDP 的凝聚。

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