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Cas12a的反式DNA切割活性对质粒或噬菌体没有可检测到的免疫作用。

The trans DNA cleavage activity of Cas12a provides no detectable immunity against plasmid or phage.

作者信息

Liu Shunhang, Rao Xichen, Zhao Ruiliang, Han Wenyuan

机构信息

State Key Laboratory of Agricultural Microbiology and College of Life Science and Technology, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China.

State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, China.

出版信息

Front Genome Ed. 2022 Jul 26;4:929929. doi: 10.3389/fgeed.2022.929929. eCollection 2022.


DOI:10.3389/fgeed.2022.929929
PMID:35958049
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9360544/
Abstract

Cas12a is a type V-A CRISPR-Cas RNA-guided endonuclease. It cleaves dsDNA at specific site, and then is activated for nonspecific ssDNA cleavage in trans . The immune function of the trans activity is still unknown. To address this question, we constructed a Cas12a targeting system in , where Cas12a cleaved a high-copy target plasmid to unleash the trans ssDNA cleavage activity. Then, we analyzed the effect of the Cas12a targeting on a non-target plasmid and a ssDNA phage. The results show that Cas12a efficiently eliminates target plasmid but exerts no impact on the maintenance of the non-target plasmid or plague formation efficiency of the phage. In addition, a two-spacer CRISPR array, which facilitates target plasmid depletion, still has no detectable effect on the non-target plasmid or phage either. Together, the data suggest that the trans ssDNA cleavage of Cas12a does not contribute to immunity .

摘要

Cas12a是一种V-A型CRISPR-Cas RNA引导的核酸内切酶。它在特定位点切割双链DNA,然后被激活以反式切割非特异性单链DNA。反式活性的免疫功能仍然未知。为了解决这个问题,我们构建了一个Cas12a靶向系统,在该系统中,Cas12a切割高拷贝的目标质粒以释放反式单链DNA切割活性。然后,我们分析了Cas12a靶向对非目标质粒和单链DNA噬菌体的影响。结果表明,Cas12a能有效消除目标质粒,但对非目标质粒的维持或噬菌体的噬菌斑形成效率没有影响。此外,促进目标质粒消耗的双间隔CRISPR阵列对非目标质粒或噬菌体也没有可检测到的影响。总之,数据表明Cas12a的反式单链DNA切割对免疫没有贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f82/9360544/da28fd34dcba/fgeed-04-929929-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f82/9360544/da28fd34dcba/fgeed-04-929929-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f82/9360544/da28fd34dcba/fgeed-04-929929-g001.jpg

相似文献

[1]
The trans DNA cleavage activity of Cas12a provides no detectable immunity against plasmid or phage.

Front Genome Ed. 2022-7-26

[2]
CRISPR-Cas12a targeting of ssDNA plays no detectable role in immunity.

Nucleic Acids Res. 2022-6-24

[3]
Making the cut(s): how Cas12a cleaves target and non-target DNA.

Biochem Soc Trans. 2019-10-31

[4]
CRISPR-Cas12a Biosensor Array for Ultrasensitive Detection of Unamplified DNA with Single-Nucleotide Polymorphic Discrimination.

ACS Sens. 2023-4-28

[5]
Sensing platform for nucleic-acid detection based on a 2-aminopurine probe sheared by trans-cleavage activity of the CRISPR/Cas12a system.

Analyst. 2023-5-30

[6]
Probing CRISPR-Cas12a Nuclease Activity Using Double-Stranded DNA-Templated Fluorescent Substrates.

Biochemistry. 2020-4-7

[7]
Unidirectional trans-cleaving behavior of CRISPR-Cas12a unlocks for an ultrasensitive assay using hybrid DNA reporters containing a 3' toehold.

Nucleic Acids Res. 2023-10-13

[8]
Recognition of DNA Target Formulations by CRISPR-Cas12a Using a dsDNA Reporter.

ACS Synth Biol. 2021-7-16

[9]
CRISPR-Cas12a Possesses Unconventional DNase Activity that Can Be Inactivated by Synthetic Oligonucleotides.

Mol Ther Nucleic Acids. 2020-3-6

[10]
RNA-Independent DNA Cleavage Activities of Cas9 and Cas12a.

Cell Rep. 2017-12-26

引用本文的文献

[1]
Trans-nuclease activity of Cas9 activated by DNA or RNA target binding.

Nat Biotechnol. 2025-4

[2]
Determinants of CRISPR Cas12a nuclease activation by DNA and RNA targets.

Nucleic Acids Res. 2024-5-8

[3]
Catalytically inactive long prokaryotic Argonaute systems employ distinct effectors to confer immunity via abortive infection.

Nat Commun. 2023-11-1

本文引用的文献

[1]
CRISPR-Cas12a targeting of ssDNA plays no detectable role in immunity.

Nucleic Acids Res. 2022-6-24

[2]
Indiscriminate ssDNA cleavage activity of CRISPR-Cas12a induces no detectable off-target effects in mouse embryos.

Protein Cell. 2021-9

[3]
Efficient Multiplex Gene Repression by CRISPR-dCpf1 in .

Front Bioeng Biotechnol. 2020-4-24

[4]
CRISPR-Cas12a: Functional overview and applications.

Biomed J. 2020-2

[5]
Mechanistic Insights into the cis- and trans-Acting DNase Activities of Cas12a.

Mol Cell. 2019-1-10

[6]
Conformational Activation Promotes CRISPR-Cas12a Catalysis and Resetting of the Endonuclease Activity.

Cell. 2018-11-29

[7]
A Multiplex Genome Editing Method for Based on CRISPR-Cas12a.

Front Microbiol. 2018-10-9

[8]
CRISPR-Cas12a-assisted nucleic acid detection.

Cell Discov. 2018-4-24

[9]
CRISPR-Cas12a has both cis- and trans-cleavage activities on single-stranded DNA.

Cell Res. 2018-4

[10]
CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity.

Science. 2018-2-15

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