State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, P. R. China.
Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin 300071, P. R. China.
J Agric Food Chem. 2022 Aug 24;70(33):10170-10181. doi: 10.1021/acs.jafc.2c03758. Epub 2022 Aug 12.
To discover novel target-based fungicidal candidates, a molecular design model was established with a three-dimensional (3D) structure of pyruvate kinase (RsPK) simulated with the AlphaFold 2 and as a fungicidal lead. A series of novel [1,2,4]triazolo[3,4-][1,3,4]thiadiazole derivatives were rationally designed, synthesized, evaluated for their fungicidal performance, and validated for their mode of action. The bioassays with indicated that compounds , , and with an EC value ranging from 1.01 to 1.54 μg/mL displayed higher fungicidal activity than the positive control with its EC of 3.14 μg/mL. Especially, exhibited high potency and a broad spectrum against , , , , , and with its EC value falling between 1.54 and 13.10 μg/mL. Like all positive controls, , , and showed excellent growth inhibition against at 200 μg/mL. Even though the PK enzymatic inhibition assay showed that was approximately 2.6 times less active than (IC: 29.14 11.15 μg/mL, respectively), the similar fluorescence quenching patterns of RsPK by and , and the docking results of interactions between RsPK and or implied that they might share the similar binding site in the RsPK active pocket. Our studies suggested that could be used as a potent fungicidal lead for further optimization. The results of comparative molecular field analysis (CoMFA) provided a direction for further molecular design.
为了发现新型基于靶标的杀真菌候选物,我们建立了一个分子设计模型,该模型使用 AlphaFold 2 模拟了丙酮酸激酶(RsPK)的三维(3D)结构作为杀真菌先导物。我们合理设计、合成了一系列新型[1,2,4]三唑并[3,4-][1,3,4]噻二唑衍生物,评估了它们的杀真菌性能,并验证了它们的作用模式。生物测定结果表明,化合物、和具有 EC 值为 1.01-1.54μg/mL,显示出比阳性对照物(EC 值为 3.14μg/mL)更高的杀真菌活性。特别是化合物显示出高效和广谱的杀菌活性,对、、、、、和的 EC 值在 1.54-13.10μg/mL 之间。与所有阳性对照物一样,、和对 200μg/mL 的 表现出优异的生长抑制作用。尽管 PK 酶抑制测定表明,与 (IC:29.14±11.15μg/mL)相比,化合物的活性大约低 2.6 倍,但 RsPK 与 或 之间的荧光猝灭模式相似,以及 RsPK 与 或 之间的对接结果表明,它们可能在 RsPK 活性口袋中共享相似的结合位点。我们的研究表明,化合物可以作为进一步优化的有效杀真菌先导物。比较分子力场分析(CoMFA)的结果为进一步的分子设计提供了方向。