Jin Yi, Qian Hong
Key Laboratory of National Forestry and Grassland Administration on Biodiversity Conservation in Karst Mountainous Areas of Southwestern China, Guizhou Normal University, Guiyang, 550025, China.
Research and Collections Center, Illinois State Museum, 1011 East Ash Street, Springfield, IL, 62703, USA.
Plant Divers. 2022 May 27;44(4):335-339. doi: 10.1016/j.pld.2022.05.005. eCollection 2022 Jul.
An earlier version of V.PhyloMaker has been broadly used to generate phylogenetic trees of vascular plants for botanical, biogeographical and ecological studies. Here, we update and enlarge this package, which is now called 'V.PhyloMaker2'. With V.PhyloMaker2, one can generate a phylogenetic tree for vascular plants based on one of three different botanical nomenclature systems. V.PhyloMaker2 can generate phylogenies for very large species lists (the largest species list that we tested included 365,198 species). V.PhyloMaker2 generates phylogenies at a fast speed. We provide an example (including a sample species list and an R script to run it) in this paper to show how to use V.PhyloMaker2 to generate phylogenetic trees.
V.PhyloMaker的早期版本已被广泛用于生成维管植物的系统发育树，以用于植物学、生物地理学和生态学研究。在此，我们对这个软件包进行了更新和扩展，现在它被称为“V.PhyloMaker2”。使用V.PhyloMaker2，可以基于三种不同的植物命名系统之一生成维管植物的系统发育树。V.PhyloMaker2可以为非常大的物种列表生成系统发育树（我们测试的最大物种列表包含365,198个物种）。V.PhyloMaker2能够快速生成系统发育树。我们在本文中提供了一个示例（包括一个示例物种列表和运行它的R脚本），以展示如何使用V.PhyloMaker2生成系统发育树。
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