Jin Yi, Qian Hong
Key Laboratory of National Forestry and Grassland Administration on Biodiversity Conservation in Karst Mountainous Areas of Southwestern China, Guizhou Normal University, Guiyang 550025, China.
Research and Collections Center, Illinois State Museum, 1011 East Ash Street, Springfield, IL 62703, USA.
Plant Divers. 2022 Dec 24;45(3):347-352. doi: 10.1016/j.pld.2022.12.007. eCollection 2023 May.
The previously released packages of the PhyloMaker series (i.e. S.PhyloMaker, V.PhyloMaker, and V.PhyloMaker2) have been broadly used to generate phylogenetic trees for ecological and biogeographical studies. Although these packages can be used to generate phylogenetic trees for any groups of plants and animals for which megatrees are available, they focus on generating phylogenetic trees for plants based on the megatrees provided by the packages. How to use these packages to generate phylogenetic trees based on other megatrees is not straightforward. Here, we present a new tool, which is called 'U.PhyloMaker', and a simple R script that can be used to easily generate large phylogenetic trees for both plants and animals at a relatively fast speed.
先前发布的PhyloMaker系列软件包（即S.PhyloMaker、V.PhyloMaker和V.PhyloMaker2）已被广泛用于生成用于生态和生物地理学研究的系统发育树。尽管这些软件包可用于为任何有巨树可用的动植物群体生成系统发育树，但它们主要专注于根据软件包提供的巨树为植物生成系统发育树。如何使用这些软件包基于其他巨树生成系统发育树并非易事。在此，我们介绍一种名为“U.PhyloMaker”的新工具以及一个简单的R脚本，可用于以相对较快的速度轻松为动植物生成大型系统发育树。
