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桥接 Amphitrite ornata 脱卤过氧化物酶 B 中反应性和抑制性之间的功能差距:用 2,4- 和 2,6-二卤苯酚进行的机理和结构研究。

Bridging the functional gap between reactivity and inhibition in dehaloperoxidase B from Amphitrite ornata: Mechanistic and structural studies with 2,4- and 2,6-dihalophenols.

机构信息

Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, United States.

Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, United States.

出版信息

J Inorg Biochem. 2022 Nov;236:111944. doi: 10.1016/j.jinorgbio.2022.111944. Epub 2022 Jul 25.

DOI:10.1016/j.jinorgbio.2022.111944
PMID:35969974
Abstract

The multifunctional catalytic globin dehaloperoxidase (DHP) from the marine worm Amphitrite ornata was shown to catalyze the HO-dependent oxidation of 2,4- and 2,6-dihalophenols (DXP; X = F, Cl, Br). Product identification by LC-MS revealed multiple monomeric products with varying degrees of oxidation and/or dehalogenation, as well as oligomers with n up to 6. Mechanistic and O-labeling studies demonstrated sequential dihalophenol oxidation via peroxidase and peroxygenase activities. Binding studies established that 2,4-DXP (X = Cl, Br) have the highest affinities of any known DHP substrate. X-ray crystallography identified different binding positions for 2,4- and 2,6-DXP substrates in the hydrophobic distal pocket of DHP. Correlation between the number of halogens and the substrate binding orientation revealed a halogen-dependent binding motif for mono- (4-halophenol), di- (2,4- and 2,6-dihalophenol) and trihalophenols (2,4,6-trihalopenol). Taken together, the findings here on dihalophenol reactivity with DHP advance our understanding of how these compounds bridge the inhibitory and oxidative functions of their mono- and trihalophenol counterparts, respectively, and provide further insight into the protein structure-function paradigm relevant to multifunctional catalytic globins in comparison to their monofunctional analogs.

摘要

来自海洋蠕虫 Amphitrite ornata 的多功能催化珠蛋白脱卤过氧化物酶 (DHP) 被证明可以催化 HO 依赖性 2,4- 和 2,6-二卤代酚 (DXP; X = F, Cl, Br) 的氧化。通过 LC-MS 进行的产物鉴定揭示了具有不同氧化和/或脱卤程度的多种单体产物,以及 n 高达 6 的低聚物。机制和 O 标记研究表明通过过氧化物酶和过氧酶活性进行顺序二卤代酚氧化。结合研究表明 2,4-DXP (X = Cl, Br) 是任何已知 DHP 底物中具有最高亲和力的物质。X 射线晶体学确定了 DHP 疏水远端口袋中 2,4- 和 2,6-DXP 底物的不同结合位置。卤素数量与底物结合取向之间的相关性揭示了单卤代酚(4-卤代酚)、二卤代酚(2,4-和 2,6-二卤代酚)和三卤代酚(2,4,6-三卤代酚)的卤素依赖性结合模式。总的来说,这里关于 DHP 与二卤代酚反应性的发现增进了我们对这些化合物如何分别桥接其单卤代酚和三卤代酚对应物的抑制和氧化功能的理解,并提供了进一步的深入了解与单功能类似物相比,多功能催化珠蛋白的蛋白质结构-功能范例。

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