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大麦( L.)基因家族的全基因组鉴定与分析

Genomewide identification and analysis of the gene family in barley ( L.).

机构信息

College of Life Science, Ludong University, Yantai 264011, Shandong, People's Republic of China.

出版信息

J Genet. 2022;101.

Abstract

The hyperosmolality-gated calcium-permeable channels (OSCA) are considered to be osmotic sensors that play an important role in the early stages of hyperosmotic stress response. We analysed the physicochemical properties, chromosome distribution, phylogeny, gene structure and expression pattern of the gene family in barley, and investigated the expression of genes in barley under drought stress by quantitative real-time polymerase chain reaction (qRT-PCR). Finally, 14 members of the gene family were identified from barley, all containing the RSN1_7TM domain and often accompanied by the RSN1_TM and PHM7_cyt domains. According to the phylogenetic relationship, they were divided into four subgroups, and each with similar gene structures. Two types of duplicate events in the genes family evolved under the effect of purification selection. By analysing the -acting elements in the HvOSCA promoter, it was speculated that the barley gene family is involved in the regulation of multiple signalling pathways. The expression of genes in barley tissues and their relative expression under drought stress revealed that the gene family plays a role in plant organ differentiation, growth and development and coping with abiotic stress. These results provide new valuable information for the functional analysis of genes and the genetic improvement of barley, and provide an important reference for follow-up research.

摘要

超渗压门控钙通透通道(OSCA)被认为是渗透传感器,在高渗胁迫反应的早期阶段发挥重要作用。我们分析了大麦中基因家族的理化性质、染色体分布、系统发育、基因结构和表达模式,并通过定量实时聚合酶链反应(qRT-PCR)研究了干旱胁迫下大麦中基因的表达。最后,从大麦中鉴定出了 14 个基因家族成员,它们都含有 RSN1_7TM 结构域,通常还伴有 RSN1_TM 和 PHM7_cyt 结构域。根据系统发育关系,它们被分为四个亚组,每个亚组都具有相似的基因结构。两种类型的重复事件在基因家族中进化,受到纯化选择的影响。通过分析 HvOSCA 启动子中的-作用元件,推测大麦基因家族参与了多种信号通路的调控。大麦组织中基因的表达及其在干旱胁迫下的相对表达表明,该基因家族在植物器官分化、生长发育和应对非生物胁迫中发挥作用。这些结果为基因的功能分析和大麦的遗传改良提供了新的有价值的信息,为后续研究提供了重要参考。

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