Beacon v2 参考实现：一个用于实现基因组和表型数据联合共享的工具包。

Beacon v2 Reference Implementation: a toolkit to enable federated sharing of genomic and phenotypic data.

机构信息

European Genome-Phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona 08003, Spain.

出版信息

Bioinformatics. 2022 Sep 30;38(19):4656-4657. doi: 10.1093/bioinformatics/btac568.

DOI:10.1093/bioinformatics/btac568

PMID:35980167

Abstract

SUMMARY

Beacon v2 is an API specification established by the Global Alliance for Genomics and Health initiative (GA4GH) that defines a standard for federated discovery of genomic and phenotypic data. Here, we present the Beacon v2 Reference Implementation (B2RI), a set of open-source software tools that allow lighting up a local Beacon instance 'out-of-the-box'. Along with the software, we have created detailed 'Read the Docs' documentation that includes information on deployment and installation.

AVAILABILITY AND IMPLEMENTATION

The B2RI is released under GNU General Public License v3.0 and Apache License v2.0. Documentation and source code is available at: https://b2ri-documentation.readthedocs.io.

SUPPLEMENTARY INFORMATION

Supplementary data are available at Bioinformatics online.

摘要

概要

Beacon v2 是由全球基因组和健康联盟（GA4GH）建立的 API 规范，它定义了一种用于发现基因组和表型数据的联邦标准。在这里，我们展示了 Beacon v2 参考实现（B2RI），这是一组开源软件工具，可允许本地 Beacon 实例“开箱即用”。除了软件之外，我们还创建了详细的“Read the Docs”文档，其中包含有关部署和安装的信息。