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利用两种隐翅虫物种(Paederus fuscipes Curtis 和 Aleochara(Aleochara) curtula Goeze)(鞘翅目:隐翅虫科)的微卫星基因座开发标记,并对遗传多样性和种群结构进行分析。

Development of markers using microsatellite loci of two rove beetle species, Paederus fuscipes Curtis and Aleochara (Aleochara) curtula Goeze (Coleoptera: Staphylinidae), followed by analyses of genetic diversity and population structure.

机构信息

Department of Biological Sciences and Biotechnology, Chungbuk National University, Cheongju, 28644, Republic of Korea.

National Institute of Biological Resources, Environmental Research Complex, Incheon, 22689, Republic of Korea.

出版信息

Genes Genomics. 2022 Dec;44(12):1471-1476. doi: 10.1007/s13258-022-01293-2. Epub 2022 Aug 18.

DOI:10.1007/s13258-022-01293-2
PMID:35982374
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9684238/
Abstract

BACKGROUND

The family Staphylinidae is the most speciose beetle group in the world. The outbreaks of two staphylinid species, Paederus fuscipes and Aleochara (Aleochara) curtula, were recently reported in South Korea. None of research about molecular markers and genetic diversity have been conducted in these two species.

OBJECTIVE

To develop microsatellite markers and analyze the genetic diversity and population structures of two rove beetle species.

METHODS

NGS was used to sequence whole genomes of two species, Paederus fuscipes and Aleochara (Aleochara) curtula. Microsatellite loci were selected with flanking primer sequences. Specimens of P. fuscipes and A. curtula were collected from three localities, respectively. Genetic diversity and population structure were analyzed using the newly developed microsatellite markers.

RESULTS

The number of alleles ranged 5.727-6.636 (average 6.242) and 2.182-5.364 (average 4.091), expected heterozygosity ranged 0.560-0.582 (average 0.570) and 0.368-0.564 (average 0.498), observed heterozygosity ranged 0.458-0.497 (average 0.472) and 0.418-0.644 (average 0.537) in P. fuscipes and A. curtula, respectively. Population structure indicates that individuals of A. curtula are clustered to groups where they were collected, but those of P. fuscipes are not.

CONCLUSION

Population structures of P. fuscipes were shallow. In A. curtula, however, it was apparent that the genetic compositions of the populations are different significantly depending on collection localities.

摘要

背景

隐翅虫科是世界上物种最丰富的甲虫群。最近在韩国报道了两种隐翅虫,Paederus fuscipes 和 Aleochara (Aleochara) curtula 的爆发。这两种物种都没有进行过关于分子标记和遗传多样性的研究。

目的

开发微卫星标记并分析两种步甲的遗传多样性和种群结构。

方法

使用 NGS 对 Paederus fuscipes 和 Aleochara (Aleochara) curtula 两种物种的全基因组进行测序。利用侧翼引物序列选择微卫星位点。从三个不同地点采集 P. fuscipes 和 A. curtula 的样本。使用新开发的微卫星标记分析遗传多样性和种群结构。

结果

等位基因数范围为 5.727-6.636(平均 6.242)和 2.182-5.364(平均 4.091),预期杂合度范围为 0.560-0.582(平均 0.570)和 0.368-0.564(平均 0.498),观察杂合度范围为 0.458-0.497(平均 0.472)和 0.418-0.644(平均 0.537)在 P. fuscipes 和 A. curtula 中,分别。种群结构表明,A. curtula 的个体聚集在它们被采集的群体中,但 P. fuscipes 的个体则不然。

结论

P. fuscipes 的种群结构较浅。然而,在 A. curtula 中,种群的遗传组成明显因采集地点而异。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54a6/9684238/ad2bfd3f2c9e/13258_2022_1293_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54a6/9684238/ce8b9d67794c/13258_2022_1293_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54a6/9684238/ad2bfd3f2c9e/13258_2022_1293_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54a6/9684238/ce8b9d67794c/13258_2022_1293_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54a6/9684238/ad2bfd3f2c9e/13258_2022_1293_Fig2_HTML.jpg

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