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sp. nov.,分离自黄海地表水,建议将 属作为 科的一个成员。

sp. nov., isolated from surface water of the Yellow Sea, and proposal of the genus as a member of the family .

机构信息

Institute of Marine Biotechnology and Bio-Resource Utilization, College of Oceanography, Hohai University, Nanjing, 210000, PR China.

出版信息

Int J Syst Evol Microbiol. 2022 Aug;72(8). doi: 10.1099/ijsem.0.005493.

Abstract

A Gram-stain-negative, non-motile and aerobic bacterium, designated HHU G3-2, was isolated from surface water of the Yellow Sea, PR China. Strain HHU G3-2 was positive for oxidase activity and negative for catalase. Optimal growth occurred at 28 °C (range, 20-37 °C), pH 7.0 (range, pH 6.0-9.0) and in the presence of 2-5 % (w/v) NaCl (range, 1-7%). Phylogenetic analysis based on 16S rRNA gene sequences and 120 ubiquitous single-copy protein-coding genes indicated that strain HHU G3-2 formed a distinct phylogenetic lineage with JCM 30134, sharing a 16S rRNA gene sequence similarity of 98.05%. Average nucleotide identity and digital DNA-DNA hybridization values between strain HHU G3-2 and JCM 30134 were 75.74 and 17.80%, respectively, which were below the threshold values of 95-96 and 70 %, respectively. The DNA G+C content of the genomic DNA was 51.17 mol%. The major fatty acids (>10 %) were C 8 (19.8 %), summed feature 3 (C 7/C 6; 15.9 %), summed feature 8 (C 7/C 6; 13.8 %) and C (10.3 %). The predominant isoprenoid quinone was ubiquinone-8. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylglycerol. Based on the polyphasic taxonomic data, strain HHU G3-2 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is HHU G3-2 (=MCCC 1K04224=JCM 34652=GDMCC 1.2418=CGMCC 1.17397). In addition, we proposed the genus as a member of the family .

摘要

一株革兰氏阴性、非运动和需氧细菌,被命名为 HHU G3-2,从中国黄海的地表水分离得到。菌株 HHU G3-2 氧化酶活性呈阳性,而过氧化酶活性呈阴性。最适生长温度为 28°C(范围为 20-37°C),最适 pH 值为 7.0(范围为 pH 6.0-9.0),并且可以在 2-5%(w/v)NaCl(范围为 1-7%)存在的条件下生长。基于 16S rRNA 基因序列和 120 个普遍存在的单拷贝蛋白编码基因的系统发育分析表明,菌株 HHU G3-2 与 JCM 30134 形成了一个独特的进化枝,16S rRNA 基因序列相似性为 98.05%。菌株 HHU G3-2 与 JCM 30134 之间的平均核苷酸同一性和数字 DNA-DNA 杂交值分别为 75.74%和 17.80%,均低于 95-96%和 70%的阈值。基因组 DNA 的 G+C 含量为 51.17mol%。主要脂肪酸(>10%)为 C8(19.8%)、特征 3 总和(C7/C6;15.9%)、特征 8 总和(C7/C6;13.8%)和 C(10.3%)。主要的异戊烯醌为泛醌-8。极性脂谱由二磷脂酰甘油、磷脂酰乙醇胺和磷脂酰甘油组成。基于多相分类学数据,菌株 HHU G3-2 代表属的一个新种,提议命名为. sp. nov. 。模式菌株为 HHU G3-2(=MCCC 1K04224=JCM 34652=GDMCC 1.2418=CGMCC 1.17397)。此外,我们将属提议为. 科的一个成员。

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