Department of Chemistry and Biochemistry, University of Colorado at Colorado Springs, Colorado Springs, Colorado.
Division of Molecular and Cellular Biology, National Science Foundation, Alexandria, Virginia; Department of Chemical and Biological Engineering and Center for Biomedical Engineering, University of New Mexico, Albuquerque, New Mexico; Theoretical Biology & Biophysics, Los Alamos National Laboratory, Los Alamos, New Mexico.
Biophys J. 2023 Jun 6;122(11):1926-1937. doi: 10.1016/j.bpj.2022.08.018. Epub 2022 Aug 19.
Galectin-3 (Gal-3) is a β-galactosidase-binding protein involved in various biological processes, including neuronal growth and adhesion. The pairing of Gal-3 with ganglioside GM1's pentasaccharide chain at the outer leaflet of the plasma membrane, which triggers downstream cell-signaling cascades, seems to be involved in these processes. A crucial feature of Gal-3 is its ability to form oligomers and supramolecular assemblies that connect various carbohydrate-decorated molecules. Although we know the atomistic structure of Gal-3 bound to small carbohydrate ligands, it remains unclear how Gal-3 binds GM1 in a membrane. Furthermore, the influence of this interaction on Gal-3's structure and oligomeric assembly has to be elucidated. In this study, we used X-ray reflectivity (XR) from a model membrane to determine the structure and surface coverage of Gal-3 bound to a membrane containing GM1. We observed that the carbohydrate recognition domain interacts with GM1's pentasaccharide, while the N-terminal domain is pointed away from the membrane, likely to facilitate protein-protein interactions. In a membrane containing 20 mol % GM1, Gal-3 covered ∼50% of the membrane surface with one Gal-3 molecule bound per 2130 Å. We used molecular dynamics simulations and Voronoi tessellation algorithms to build an atomistic model of membrane-bound Gal-3, which is supported by the XR results. Overall, this work provides structural information describing how Gal-3 can bind GM1's pentasaccharide chain, a prerequisite for triggering regulatory processes in neuronal growth and adhesion.
半乳糖凝集素-3(Gal-3)是一种β-半乳糖苷酶结合蛋白,参与多种生物学过程,包括神经元的生长和黏附。Gal-3 与质膜外层的神经节苷脂 GM1 的五糖链结合,触发下游细胞信号级联反应,似乎参与了这些过程。Gal-3 的一个关键特征是它能够形成寡聚体和超分子组装,连接各种糖基化分子。虽然我们知道 Gal-3 与小分子碳水化合物配体结合的原子结构,但尚不清楚 Gal-3 如何在膜中结合 GM1。此外,还需要阐明这种相互作用对 Gal-3 结构和寡聚体组装的影响。在这项研究中,我们使用来自模型膜的 X 射线反射率(XR)来确定与含有 GM1 的膜结合的 Gal-3 的结构和表面覆盖率。我们观察到,碳水化合物识别结构域与 GM1 的五糖相互作用,而 N 端结构域指向膜外,可能有利于蛋白质-蛋白质相互作用。在含有 20 mol% GM1 的膜中,Gal-3 覆盖约 50%的膜表面,每个 Gal-3 分子结合在 2130 Å 上。我们使用分子动力学模拟和 Voronoi 网格算法构建了一个原子模型,该模型支持 XR 结果。总的来说,这项工作提供了描述 Gal-3 如何结合 GM1 的五糖链的结构信息,这是触发神经元生长和黏附中调节过程的前提。